I've looked through the DNAnexus and Hail documentation but haven't been able to find anything. Ideally it would be done using Hail, but that may be even harder to find.
We are developing and end-to-end target discovery workflow demo which would include PheWAS and expect to release that in Jan or Feb next year.
From our experience PheWAS package in R is pretty easy to follow. There are other option like PHESANT app on DNAnexus too, but we didn't go with that approach.
Comments
2 comments
We are developing and end-to-end target discovery workflow demo which would include PheWAS and expect to release that in Jan or Feb next year.
From our experience PheWAS package in R is pretty easy to follow. There are other option like PHESANT app on DNAnexus too, but we didn't go with that approach.
@Ondrej Klempir? might have more to add.
I have some experience with running R PheWAS from within the JupyterLab. For now, for installation details and a brief PheWAS discussion, please see the following thread: https://community.dnanexus.com/s/question/0D5t000003zuVPcCAM/im-having-difficulty-install-the-r-package-devtools-has-anyone-else-had-success-installing-this-package
Please sign in to leave a comment.