Former User of DNAx Community_7

How can I capture Hail errors on the RAP?

Hi all?   I have a quality-of-life question. When running Hail on DNAnexus, my notebook often gets disconnected while code is running (e.g. I need to close my laptop). I understand that I can use a...

• Former User of DNAx Community_7
• 22 February 2023 00:00
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Hi all?is anyone aware of an example of code to run a PheWAS on the UKB RAP?

I've looked through the DNAnexus and Hail documentation but haven't been able to find anything. Ideally it would be done using Hail, but that may be even harder to find.

• Former User of DNAx Community_7
• 07 December 2022 00:00
• 2 followers
• 2 comments
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good to know. thank you!

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• 18 August 2022 17:34
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Follow-up question on this: in ttyd, I'm not able to use dx-create-snapshot. Is it possible to create snapshots on a ttyd instance?

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• 17 August 2022 11:45
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Great?on a broader level I guess I don't understand how the dx fuse system works. Will try your suggestions later today and see what documentation I can find on dx fuse. Thank you all!

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• 15 August 2022 15:35
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Thank you very much! I think I could also benefit from understanding read/write permissions to the filesystem. Is there a place I could gunzip the vcf.gz file to?

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• 15 August 2022 15:21
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Hi Lora?for context, I'm trying to accomplish what is set out in this post, which is basically to analyze some of the pVCFs using HAIL.  I've now managed to locate the pVCF that I need using this f...

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• 15 August 2022 15:08
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Thank you Ondrej! I wonder if it is worth the trouble then. I have two follow-up questions for you? One, if we do try to do this with HAIL, then it seems like the relevant code from the link you pr...

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• 11 August 2022 06:06
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Hi folks, I have a basic question for you?how can we access the exome sequencing data (preferably as the VCFs) using HAIL on the UKB RAP?

I was watching your video on the documentation site, and it says that the data should be available as a MatrixTable. I haven?t been able to find any further documentation on the site.   Best, Jeremy

• Former User of DNAx Community_7
• 10 August 2022 00:00
• 3 followers
• 4 comments
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