Hi! I am interested in the UK Biobank WES data in the pVCF files made with DeepVariant and Glnexus (23157) and I am pretty new to this field. I would like to understand better what variants end up in these files and which might have been filtered out. Do you have any recommendations on best places to look for that info?
Thanks!
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UKB Showcase Category 170 Whole Exome Sequences , https://biobank.ndph.ox.ac.uk/showcase/label.cgi?id=170 has some links to related resources,
In particular, the publication by Szustakowski et al https://www.medrxiv.org/content/10.1101/2020.11.02.20222232v1 describes the process.
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