What does a manifest txt looks like in DNAnexus analysis?
I'm running GLnexus to generate a cohort vcf from a list of gvcfs, but I don't know what the format of Variants gVCF manifest txt to feed into GLnexus looks like. Is there any example?
I have a list of eids, like:
/redacted
….and so on.
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2 comments
A GLnexus manifest file has one gVCF filename per line. (https://github.com/dnanexus-rnd/GLnexus/wiki/Getting-Started)
Example code f how to make one can be found here:
https://dnanexus.gitbook.io/uk-biobank-rap/science-corner/whole-exome-sequencing-oqfe-protocol/protocol-for-processing-ukb-whole-exome-sequencing-data-sets
Thank you very much for your help！ The problem has been solved.
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