George F
UKB Community team
Data Analyst
Activity overview
Latest activity by George F
-
George F commented,
Dear Arsala,You can use the dx download command to download a VCF to an instance.However it may be more time and cost effective to process the 2000 files of interest using an app such as swiss-army...
- View comment
- 0 votes
-
George F commented,
Dear Thouis,To reduce the chance of removing too many participants based on missingness, first filter the non-PASS variants before doing the sample level missingness filtering.Hope this helpsGeorge
- View comment
- 0 votes
-
George F commented,
Dear Huijie,To reduce the chance of removing too many participants based on missingness, first filter the non-PASS variants before doing the sample level missingness filtering.Kind regardsGeorge
- View comment
- 0 votes
-
George F commented,
Hi The Genotype call are not imputed. Please see Showcase categories and fields for notes and links to publications for more info: https://biobank.ctsu.ox.ac.uk/showcase/label.cgi?id=100319 https:/...
- View comment
- 0 votes
-
George F commented,
Dear David,As the same sharding schema is used you can use resource 2009 on both Fields 24311 and 24310.Hope this helpsGeorge
- View comment
- Edited
- 0 votes
-
George F commented,
Dear Ilakya,You can copy files between UKB-RAP projects as long as they both belong to the same UKB application. The dx cp command can be used to do this: https://documentation.dnanexus.com/user/he...
- View comment
- 0 votes
-
George F commented,
This may be a result of participant withdrawals.
- View comment
- 1 vote
-
George F commented,
Dear Taiki, You are correct. The eids in the joint call pVCF match the project EIDs. For individuals files only the filename is renamed to the match the EID. Hope this helps
- View comment
- 0 votes
- Official comment
-
George F commented,
Chai Fungtammasan are you able to provide any guidance on this.
- View comment
- 0 votes
-
George F commented,
Hi Annie,That is correct this field is the PC1-40 for each participant.The cohort browser is useful for an initial feel for the data. However, for further information and analysis we recommend expl...
- View comment
- 0 votes