how to install Bioconductor package limma in RStudio Posit Workbench

Bhawana Singh

I am running below command in RStudio Posit Workbench

if (!require("BiocManager", quietly = TRUE))
   install.packages("BiocManager")

BiocManager::install("limma")

But it is not installing and giving non-zero exist status. Can you please suggest how to install this package? 

Comments

1 comment

Date Votes
  • Comment author
    Bethan Data Analyst

    Hi Bhawana,

    I’ve just tested the same commands you shared, but I haven’t been able to reproduce the errors you have experienced on my side. When you try running the installation again now, are you still seeing the same issue? 

    In some cases, running the following commands in the terminal beforehand can resolve issues related to package installation:

    sudo apt update
apt upgrade

    These commands refresh your system’s package index and ensure that all system-level dependencies are up to date.

    If the problem persists even after retrying with the above, I would recommend contacting DNAnexus Support, as this may indicate an issue specific to your project environment. You can reach them at:

    support@dnanexus.com

    Thank you for using the community!
     

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