Getting started with the UKB-RAP
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In cohort browser plots for 2 chosen cohorts are overlapping in tiles - is there any way to force them side-by-side, as it was in the video tutorials?
- Former User of DNAx Community_40
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Hello, I am using RStudio workbench. I am doing a task that takes quite long time. I get an error message and my session ends even though I am in Rstudio. Is there anyway to extend active session in RStudio? Thanks.
- Former User of DNAx Community_71
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How to use --batch-tsv with swiss army knife?
- Former User of DNAx Community_23
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Query of the week #3: Bring your custom script to analyse UKB data
- Ondrej Klempir
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Using rsID to apply genomic filter on my RAP cohort
- Former User of DNAx Community_87
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There are 5 collaborators under my project, does that mean our project has 40 x 5 = 200 pounds as the initial credit? How to set up the bill for RAP activities to be charged to the 200-pound project account, not my personal 40-pound account? Thank you!
- Former User of DNAx Community_77
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I would like to know how is the pricing calculated? I've requested mem2_ssd1_v2_x32 and I can see that the spot/hr has a cost of 0.2112 GBP. However my job has been running for 21hr and I'm getting charged 19 GPB so far. The math does not make sense
- Permanently deleted user
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How to upgrade a package in dna nexus?
- Former User of DNAx Community_6
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Jobs trying to retrieve cached results?
- Permanently deleted user
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Why, in my downloaded main data, does UDI 40001-0.0 contain a lot other that ICD10 codes?
- Former User of DNAx Community_99
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Why i do not see and cannot download the project files inside a custom applet?
- Former User of DNAx Community_3
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How many wallets can each user have associated with the RAP? Is there a way to pay in advance certain amount of money towards storage/analysis in the RAP platform? How is this set up with institutions?
- Permanently deleted user
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Rate card vs quote previewed in RAP
- Permanently deleted user
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Do I have to install dx-toolkit in ttyd to interact with platform?
- Chai Fungtammasan
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If I am on Tier3, do I still have to pay to use RAP?
- Chai Fungtammasan
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Data types
- Permanently deleted user
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How to upgrade to most recent version of dx-toolkit?
- Former User of DNAx Community_22
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Downloading or searching job logs -- where are they?
- Former User of DNAx Community_41
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What are the legal requirements for exporting a subset of the variant calls from the WGS or WES in DNAnexus to our internal (not local machine) work environment. Can we export a subset of variant calls to join with the clinical data?
- Former User of DNAx Community_94
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Is it possible to run a high priority app (e.g. ttyd) while many jobs are queued?
- Former User of DNAx Community_47
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How can I terminate all running/waiting jobs?
- Former User of DNAx Community_47
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200K WGS data
- Permanently deleted user
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Getting "Reconnect Your Account to UK Biobank" every time I try to log in to the RAP
- Permanently deleted user
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gzip can't be run in aws:eu-west2?
- Former User of DNAx Community_41
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How to access returned data sets using the cohort browser
- Former User of DNAx Community_48
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When running dx download within an applet does this incur an egress fee? (data downloaded from project applet is running in) Many Thanks, Barney
- Former User of DNAx Community_51
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What is the best way to separate participant IDs by ancestral genetic grouping? Similar to Data-Field 22006 (Genetic ethnic grouping) but for each ancestral group and not just Caucasians.
- Permanently deleted user
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How to create an applet which uses spark and a custom docker image
- Former User of DNAx Community_8
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What is the best way to filter samples to keep only unrelated individuals as well as only one individual from related pairs? I am working with WES pVCF files.
- Permanently deleted user
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Are there commands similar to squeue, scancel in SLURM for batch submitted jobs using dx run on UKB/RAP? Or any scripts available?
- Permanently deleted user
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