Advanced tools and tutorials
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DNAnexus Notebook File Load Error
- Nik
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How to edit and run a script on DNAnexus dx?
- Federica Merella
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SAIGE-GENE: Is it possible to analyse chrY?
- Skh
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Trying to export the entire participant entity using Table Exporter
- May A. Baydoun
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This job has been restarted due to SpotInstanceInterruption from running this job
- Arezoo Mohajeri
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How to use GCTA on the RAP
- Hannah Louise Nicholls
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Remote Debugging Python script with VS code and ttyd console
- Peter Haupt
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Filtering Null values in Cohorts
- Appaji Mahesh Abhishek
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Avoid data loos upon SpotInstanceInterruption
- Robin Mjelle
- Edited
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How frequently are "low priority workstations" restarted
- Fidel Alfaro Almagro
- Edited
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Parallel process multiple commands chromosome wise on swiss army knife
- Priyatam Dutta
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Is it possible to dynamically input files in swiss-army-knife functions?
- Hannah Louise Nicholls
- Edited
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How to properly write paths with the CLI and dx?
- Former User of DNAx Community_18
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How to tell that a job has failed due to an out of memory error when it completes with state "done"
- Former User of DNAx Community_47
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Issue accessing hail-generated output
- Former User of DNAx Community_6
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Is it possible to include multiple bash scripts in a single applet?
- Former User of DNAx Community_10
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Version of the Annotation Database when running the snpEff tool
- Former User of DNAx Community_35
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Is there a way to access locally stored files in project from a submitted job without having to use "dx download"
- Former User of DNAx Community_14
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How to run an applet with a different machine?
- Former User of DNAx Community_10
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Polite inquiry about how to obtain the specific behavior pattern variables of accelerometry, such as the maximum daily sedentary bout length or the number of daily sedentary bouts?
- Former User of DNAx Community_75
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Issue stopping the dispensing option
- Former User of DNAx Community_6
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I am getting the following error when I try to run these lines in JupyterHub. Any help would be appreciated. sc = pyspark.SparkContext() spark = pyspark.sql.SparkSession(sc) RuntimeError: Java gateway process exited before sending its port number
- Former User of DNAx Community_11
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How to log all command outputs to the log file?
- Former User of DNAx Community_10
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How to view the job_error.json?
- Former User of DNAx Community_10
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ttyd vs. cloud station. What is the main difference?
- Former User of DNAx Community_20
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Issue running bolt lmm
- Former User of DNAx Community_6
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Different DNAnexus URLs
- Permanently deleted user
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CalledProcessError: Command '['/opt/notebooks/bgen.tgz/build/apps/bgenix', '-g', 'imputed/ukb21008_c1_b0_v1.bgen', '-incl-rsids', 'rs74045046']' returned non-zero exit status 255.
- Former User of DNAx Community_21
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index_bgen in RAP using imputation files
- Former User of DNAx Community_13
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I am creating a new workflow from scratch with my own custom apps. How can I have 1 central version of this workflow without needed to copy it to directories where the data is located? I want this workflow to be private to my project.
- Former User of DNAx Community_27
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