Rachael W
UKB Community team
Data Analyst
Comments
Recent activity by Rachael W
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UK Biobank has mitochondrial DNA sequencing data. See UKB Showcase https://biobank.ndph.ox.ac.uk/showcase/label.cgi?id=263 , where MT stands for mitochondrial.Private companies can apply for acce...
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The UKB RAP is only one of several platforms that the DNAnexus team host. I don't know if you have a login to both platforms, but I only have one for the ukbiobank.dnanexus.com url.I don't think it...
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Hello again,the leukemia data is a bit odd, in that the codes don't show up in the List View within the Apply Filter. However, the data is present, and can be used for filtering. Instead of ent...
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I tried the C92 (myeloid leukaemia) code in a filter of p40006_i0 again today, and it seemed to be fine. I don't know what was wrong last week (user or system) but it seems to be fixed now.
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I cannot find the Leukemia data at present - I'll follow that up and get back to you. For creating a cohort in general, using Lip Neoplasm as an example : Use UKB showcase to identify the fields th...
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These predictions are rough calculations taken from the observed incidence rates per year since recruitment in UKB for a range of diseases and then projecting numbers based on the difference betwee...
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If data is in the CRAM but not in the gVCF, that looks like some kind of QC filter. Can you see a similar loss of information from the CRAM to the gVCF in a nuclear chromosome?
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Further update from our bioinformaticians:For this query we can only recommend that the researcher either contacts the authors of the study (https://biobank.ndph.ox.ac.uk/ukb/label.cgi?id=180) or a...
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I am not entirely sure that I have understood this correctly, so please check it yourself, but I think the Halldorsson paper says that the joint calls were made using GraphTyper with a parameter of...
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Hi Natalie, for fields 20280 to 20283, please see this announcement on the UKB website. https://www.ukbiobank.ac.uk/enable-your-research/about-our-data/august-2023-showcase-update
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