Anastazie Sedlakova DNAnexus Team
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Recent activity by Anastazie Sedlakova
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Yes, I think so.
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> The results file contains ALLELE0 and ALLELE1 columns but the values are not alleles (not A<C<G<T) (attached). Because you are doing burden test, it creates masks by joining variants, therefore y...
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Hello,maybe problem is with the entity? Entity provided should be entity name, which is lowercase, e.g. participant.I was able to run table exporter successfully with the following settings:Dataset...
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Hello, 'p23450_i0' is field name. Corresponding field title is Docosahexaenoic Acid | Instance 0. Can you please try this field title?
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Hello, it is possible, depending on what exact fields do you want to use. There are similarly-named fields at different levels. At the participant level there is summary diagnosis (ever) and summar...
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In most cases, the transfer within AWS from S3 project storage to the EC2 worker is very fast.
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Hello, you can use following code in the JupyterLab that you launched in the project of interest. I am using folder Bulk as an example. import csvimport sysimport dxpyfrom dxpy.utils.resolver impor...
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Allele frequency is counted from the number of samples WES data, depending on what WES release is dispensed in the project. In your case it is probably 450K WES. You can get the number of participa...
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In AD-by-proxy GWAS analysis, 22006 field was used for filtering as following:(pdf['p22006']==1) & # in_white_british_ancestry_subset
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Hello, I do not have my own experience, but I know that other researchers are using PennCNV to get CNV from genotyping results.
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