Anastazie Sedlakova DNAnexus Team
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Recent activity by Anastazie Sedlakova
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In our internal experiment, we saw that pruning helps reduce the number of variants and thus helps reduce time spent for following analysis (e.g. liftOver and step1 of GWAS). The number of data (va...
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Can you please give an example of files that you want to store? Generally, Jupyter Notebook checkpoints are stored in .Notebook_archive, environment snapshots are stored in .Notebook_snapshots. Al...
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> Do terminated jobs are also charged for the time used?Yes, user is charged for terminated jobs. With normal priority there is a possibility that there will be spot termination > Are there job ter...
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Hello, when you are choosing normal priority job , it can be either spot instance or on-demand. Spot instance costs lower, but can be terminated unexpectedly, which is what likely happened in your ...
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Please contact authors of the paper for more details.
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Hello, UK Biobank is currently working on that. We are expecting these files to be available in Q2.
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I made a short python notebook to loop for BGEN sample files for all chromosomes.
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{@005t000000BBzagAAD}? I think that you are interested in 22020 field - Used in genetic principal components. In order to construct genetic principal components, only unrelated participants were us...
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I think that based on showcase Item type attribute for each field, Bulk folder on RAP should contain fields with the following types: Bulk, Records https://biobank.ndph.ox.ac.uk/showcase/help.cgi?c...
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Genotyping data, whole genome sequencing and whole exome sequencing data should be in the Bulk folder on UKB RAP. In case you do not see it, please check what data fields you have in the AMS system.
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