Anastazie Sedlakova DNAnexus Team
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Recent activity by Anastazie Sedlakova
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For dxfuse mount system, use /mnt/project/ for all projects.
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Hello,you can use dx watch -l INFO, this will print only INFO level logs. Here is an example $dx watch -l INFO job-IDWatching job job-ID. Press Ctrl+C to stop.* ttyd (terminated) job-ID...2021-12-0...
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@Keri Multerer? I am assuming that you are citing this article. I was able to find documentation for the interim genotype result in Showcase documentation, but it is not connected with any data fi...
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This is not a straightforward question to answer and it will depend on the context (see list of parameters to consider). Final running costs can only be estimated with confidence through a test run...
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By quick googling I found tutorial on how to extract common variants from two sets of PLINK files. This tutorial uses PLINK, which is installed in Swiss Army Knife tool on UKB RAP. Alternativelly, ...
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Hello,yes, 300K Whole Exome data are available per chromosome and per region, therefore also a total of 977 compressed VCF files (excluding 977 index .tbi files).
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Yes, I have a problem when doing LD clumping with PLINK. ./plink ... --clump-p1 1 --clump-r2 0.1 --clump-kb 250 --clump significant_variants.txt --clump-snp-field Name --clump-field Pval By running...
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I did grouping of digit for different category (first letter) for three ICD10 fields that are in UK biobank data, see attached table. 4 digit codes are present for some categories but not for all.
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@Marianna Sanna? Can you please check that when you are writing full path, you are adding /mnt/project/? e.g./mnt/project/Bulk/Whole genome sequences/Whole genome GraphTyper joint call pVCF/ukb2335...
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Hello, here is general guidance , but please refer to your MTA. UKB RAP will restrict you to download WGS and WES data.https://dnanexus.gitbook.io/uk-biobank-rap/frequently-asked-questions#can-data...
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