Chai Fungtammasan DNAnexus Team
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Recent activity by Chai Fungtammasan
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All the cloud workers on UKB-RAP are still considered inside of the platform, so access or download those files to the worker on RAP regardless of app (ttyd, Jupyter, swiss-army-knife, etc) aren?t ...
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yes, the general flow is to save file to worker first and then upload to project later on. https://www.youtube.com/watch?v=glIjnFxlw-I&list=PLRkZ0Fz-n3Z7Jg0Vz4vudLYnBza4EUGLM&index=11&t=1s There is...
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This is a really good question. It's a critical question for efficient cloud computing. I can share my tips, but would love to see what other people in the community think. Hope you don't mind a su...
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We have a video that describe the process to upload/download files in detail. See this vide for the full demonstration which also include the trick to save installed packages, etc.https://youtu.be/...
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This data is not available yet. Most likely it would come out next year. We will make announcement in the community and newsletter when it comes out.
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You can see example code here. https://documentation.dnanexus.com/getting-started/developer-tutorials/python/parallel-by-region-py#split-workload https://github.com/dnanexus/dnanexus-example-applet...
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For this, you might need to check with UKB team when the data would be available. I sent a request to DNAnexus data team, but they released all the data they received, so they would still need to a...
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The loading time would depend on the I/O bandwidth of the instance. The instance with more number of core would load faster because the bandwidth is number of core * bandwidth of each core. Note th...
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@Joe Dennis? The file qc_metrics_graphtyper_v2.7.1_qc.tab.gz would have the column "contig" and "POS" for the variants that you need and the "region" column indicating which region those variants b...
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Users can save the spark event logs to later view the UI through Spark?s history server. Running bash /cluster/dnax/bin/collect_log.sh <output_directory_name> in the terminal of the jupyter+spark a...
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