Chai Fungtammasan DNAnexus Team
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Recent activity by Chai Fungtammasan
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The WGS and WES could not be exported outside the RAP per UKB policy, so the data exploration of these files need to be done on RAP. You would have to run one of interactive workstations that I men...
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I would say that most of UKB-RAP tutorials (Overview, Jupyter, Rstudio) cover basic file exploration. The best option would also depend on what tools that you usually use for the file exploration. ...
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We can see the gff file https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.26_GRCh38/GCF_000001405.26_GRCh38_genomic.gff.gz there. Can you try this? 1. From https://www.ncbi.nlm...
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You may find a short tutorial on this topic here that cover all download/upload aspect.https://www.youtube.com/watch?v=glIjnFxlw-I
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@Li Ping? please post this as a new question. We try to keep one thread for one topic.
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Just want to let you know that we have been in communication with Nvidia developer to ask protocol that they create the index file. We will share once we get the info.
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Whilst upgrading the platform to prepare for the release of half a million Whole Genome Sequences, we experienced a technical issue that has required us to pause the dispensing and refreshing of da...
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I looked into it, but I don't think this is possible the way it is. The data is just a text with no header, column or row name. I can't really tell which variant or individual each value came from....
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I see. You would need to write a script to remove duplicate. Then you can use swiss-army-knife to run that python script on your file.
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Can you select those files and just remove them? Or maybe not upload them to the platform to begin with.
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