Chai Fungtammasan DNAnexus Team
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Recent activity by Chai Fungtammasan
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I see. Thanks for sharing the solution. In case you are interested, on UKB-RAP, you could use Table Exporter app to get the data you need and select if you want TSV or CSV. It still won't work dire...
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Understood. You would need to contact UKB directly for the issues with data in Showcase. This community is for UKB-RAP users, so we don't know how to help you. I would recommend you to try the UKB-...
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Did you download it through UKB-RAP or you download it directly from Showcase?
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We will let UKB know that this informatin is critical for working with this data. We did not receive this file from UKB, and most likely UKB didn't receive it from data provider. Meanwhile, have ...
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The app-gzip isn't available on UKB-RAP. You may use swiss-army-knife, or one of interactive workstation to change file compression.
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You could speed it up by increase the number of node and core in instance type in the analysis. It would cost more though. What analysis you are looking to perform? There are quite a number of tut...
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Do you want to run R interactively? If that is the case, do you want to develop the script in Rstudio instead? We have it available on our platform and the tutorial by our R expert here.I tried to ...
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There are some approaches I tried before, but I am also welcome other community members to step in if there is a better method. 1) use dx-create-snapshot within cloud_workstation to save the enviro...
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@UK Biobank DA Team?
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Hmm. It's fair to say that if you want to avoid saving intermediate files, doing the filtering Hail is a good solution (albeit the problem with resource estimation that you raise). However, before ...
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