Chai Fungtammasan DNAnexus Team
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Recent activity by Chai Fungtammasan
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@Burcu Çevik? is the above screenshot came from UKB data? If so, could you remove this post and repost with no UKB data?What programming language you are using? We can share the one we have been us...
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You can add both python script and your exome file as input for swiss-army-knife. Then you can run your python script on those exome files.
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The easiest way to get start on running non-interactive job is via swiss-army-knife tool. See video how to run GWAS using swiss army knife here. https://youtu.be/762PVlyZJ-U?t=1318Or you may start ...
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@Andrew Anighoro? Rachel is right. Only the https://ukbiobank.dnanexus.com/ is needed.The platform.dnanexus.com is for generic DNAnexus customer. You can still access UKB-RAP via platform.dnanexus....
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I personally like to use this https://bgen-reader.readthedocs.io/en/latest/quickstart.htmlThe documentation is good, and you can code with either NumPy or Dask style. The bgen package has the abil...
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Yes, return of results is not part of the main dataset.
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From UKB Showcase, the Return of Results in Showcase have to be fetch using the ukblink. See the documentation here. https://biobank.ctsu.ox.ac.uk/~bbdatan/Accessing_UKB_data_v2.3.pdfWe are aware t...
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sorry to hear. Okay. let's try this from scratch.1) run one of interactive workstation. This could be ttyd, cloud_workstation, Rstudio, Jupyternotebook, etc. 2) using terminal of that app and to i...
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My bad, the PLINK package I found is for something else.However, you should still be able to install program you need to do interactive work in Rstudio though.
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We don't have the view access for your analysis, so you may need to contact ukbiobank-support@dnanexus.com for debugging question. I check in swiss-army-knife, but didn't find path you mentioned, s...
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