Chai Fungtammasan DNAnexus Team
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Recent activity by Chai Fungtammasan
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It's in the name of the file or in the header of pVCF depending on data type. This will be covered in Overview webinar next week. https://hello.dnanexus.com/uk-biobank-research-analysis-platform-ov...
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sorry I could not help with that. You would have to check with @UK Biobank DA Team?
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I can't disclose the info of UKB data itself. However, there is this public data that might be useful for your case. https://biobank.ndph.ox.ac.uk/showcase/field.cgi?id=131022 From that, I would g...
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Just to double check. Did you get everything you need?
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Do you mean final WES? We discussed 450k WES above.
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@Gustav Ahlberg? Thanks for clarifying which helps_files you are discussing. Here is some additional info we have.ukb23149_450k_OQFE.annotations.txt.gz and ukb23149_450k_OQFE.sets.txt.gz are annota...
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There is a plan to make PLINK bed bim fam files available, but the timeline is uncertain.
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The main exome sequencing data released on RAP is processed with OQFE pipeline. You can see the link to related publications which contain the involved research groups here. The link also describes...
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When you run this, is it before or after our recent Jupyterlab update (happened in late July)? Just want to make sure we rule out the older version issue first.
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The OQFE 450k whole-exome sequencing data is processed in the same way as the OQFE 200k WES. There is a note on the top saying that `Fields 23141-23146 will eventually contain information on all t...
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