Ondrej Klempir DNAnexus Team
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Recent activity by Ondrej Klempir
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Hi {@005t000000AD7ADAA1}?, I worked on a similar thing a couple of months ago and I would not recommend to unzip and upload many many files back to platform. It may cause a high load and also navig...
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Hi Kathryn, UKB RAP has the following Rate Card (list of available instance types):https://dnanexus-prod-asg-dnanexusprodassets4d7ed69b-i607e894f3ya.s3.us-east-1.amazonaws.com/images/files/UKB_Rate...
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You should be able to export results from LocusZoom as it is demonstrated here: https://www.youtube.com/watch?v=762PVlyZJ-U&t=2889sYou should be then able to upload the results back to UKB-RAP proj...
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https://github.com/OxWearables/rap_wearables/blob/main/1_Extract_Data.ipynb
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https://github.com/OxWearables/rap_wearables/blob/main/2_Further_Prep_in_R.ipynb
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For time to event analysis, my idea is to get inspiration from the following repository:https://github.com/OxWearables/rap_wearables I really like this notebook https://github.com/OxWearables/rap_w...
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How I understand this - for different variation type (e.g. snp, indel) at the same location, each variation type is being assigned its own variant/line in VCF file. As @Chai Fungtammasan? said, it ...
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@Anastazie Sedlakova?, do you please have any ideas on this topic?
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Hello @Chinonso Odebeatu?, for data dispensal process, please contact ukbiobank-support@dnanexus.com. They will be able to troubleshoot it
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C: "I have also managed to retrieve a list of all available CRAM files and their corresponding folder (although in a quite convoluted way, since I haven't yet found a way to use wildcards on `dx ls...
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