George F
UKB Community team
Data Analyst
Comments
Recent activity by George F
-
Hi Hayley,Please see this paper for info on the DRAGEN data creation: https://www.medrxiv.org/content/10.1101/2023.12.06.23299426v1.supplementary-material Hope this helpsGeorge
- View comment
- 0 votes
-
HiThe ukb23158_500k_OQFE.90pct10dp_qc_variants.txt file was created the same way as the ukb23145_300k_OQFE.90pct10dp_qc_variants.txt, which was filtered for variants that passed quality control.bcf...
- View comment
- -1 votes
-
Hi Anushka,Currently batch information is not provided for this category. However, the whole exome data was released in tranches which may be useful as a batch proxy - the information can be found ...
- View comment
- 0 votes
-
Hi Ashwin,This VCF and the VCFs in field 23141 are from single samples. Multi-sample VCFs are labelled as “population VCFs” in the field title on UK Biobank (ie field 23157).Note: the participant e...
- View comment
- Edited
- 1 vote
-
Hi Sasha, The Showcase website: https://biobank.ctsu.ox.ac.uk/showcase/search.cgi can be used to to explore the data. Alternatively exploring the field.tsv in the "Showcase metadata" of your UKB-RA...
- View comment
- 1 vote
-
Dear Tokhir, You can only download summary level data from the RAP not individual level data.In this example you could download the variant name and MAF summarised for the subsampled populationbut ...
- View comment
- 0 votes
-
Dear Bing Zhang, Please see this documentation for information about compiling workflows:https://documentation.dnanexus.com/developer/building-and-executing-portable-containers-for-bioinformatics-s...
- View comment
- 0 votes
-
Hello Alexander, Can you provide some more information on the commands used and error messages you are having?
- View comment
- 0 votes
-
HiIf you wish to run prsice2 on all the individuals/positions available in one analysis I think using the --target-list may be the correct path. However, I would suggest reaching out to the authors...
- View comment
- 0 votes
-
Hi Shangyou,By selecting high priority, on-demand instances will be selected. Low priority will select spot instances. Normal priority will try select a spot instance but will switch to on-demand a...
- View comment
- 0 votes