Brenton Pyle DNAnexus Team
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Recent activity by Brenton Pyle
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Have questions about the 200k WGS Joint Variant Call Data Release? Ask them here!
The DNAnexus team will monitor this post to help answer any of your questions about accessing and working with the new data release on RAP.
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New 200k WGS Joint Variant Call Data Release
The new UK Biobank Joint Variant Call whole genome sequencing data release is now available on the Research Analysis Platform. The new data release encompasses an additional joint call on the exist...
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It seems that the recently dx uploaded files does not show up on /mnt/project until I re-start the whole Jupyter Lab VM
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What about something as simple as retrieving the file names (i.e., as would be done with ls or find). Do these also need to be sent through a dx run request? What about visualizing the output (i.e., cat, less..)?
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Will OCT Converter be implemented in the future? i.e the OCT iamges are *.FDS and *.FDA files
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Is ?project? the literal name of this particular project, or it would be ?project? regardless of the actual project name?
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Is it useful to convert .nii.gz files to .nii - and what is the difference between the two formats?
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Do the multiple jobs run simultaneously by default? or does the for loop run everything sequentially?
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Do you have visualizations for repeated IDPs - trajectories?
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If you want to run commands on many large files (such as whole-genome sequencing CRAM files), won't transferring the files to project storage take a lot of time/compute?
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