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#CheadleDA UK Biobank Data Analysts The helpers that keep the community running smoothly. UKB Community team Data Analyst

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Latest activity by #CheadleDA UK Biobank Data Analysts

  • #CheadleDA UK Biobank Data Analysts created an article,

    Understanding Regions of Interest (ROIs) in UK Biobank DXA imaging data

    Overview Dual-energy X-ray absorptiometry (DXA) provides quantitative measures of body composition and bone mineral density (BMD) and is part of the imaging project within UK Biobank. ROI boundarie...

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  • #CheadleDA UK Biobank Data Analysts created an article,

    Returning Derived Data to UK Biobank

    Researchers using UK Biobank data are required to return key individual-level derived results generated as part of their approved research project.  Returning these data allows them to be incorpora...

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  • #CheadleDA UK Biobank Data Analysts created an article,

    Will User-Generated Files Be Automatically Filtered for Withdrawals?

    Researchers have asked whether user-generated files are automatically filtered to exclude withdrawn participants. The answer is no; these files are not automatically filtered. To ensure compliance,...

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  • #CheadleDA UK Biobank Data Analysts created an article,

    JupyterLab with FSL and FreeSurfer

    This article provides some practical examples of how to access and use JupyterLab with FSL and FreeSurfer to perform brain imaging analysis, complete with details of how to visualise images. The wo...

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  • #CheadleDA UK Biobank Data Analysts created an article,

    Running Docker images with the Swiss Army Knife GUI on the UKB-RAP

    IntroductionThis article explains how to use Docker images within the Swiss Army Knife (SAK) using the graphical user interface (GUI) on the UKB-RAP. The process is illustrated using the OxWearable...

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  • #CheadleDA UK Biobank Data Analysts created an article,

    Cardiac Magnetic Resonance Imaging-Derived Phenotypes (CMR IDPs)

    IntroductionUK Biobank’s imaging project is collecting multi-modality imaging data on over 100,000 participants, including cardiac magnetic resonance (CMR) scans. To make this more accessible for r...

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  • #CheadleDA UK Biobank Data Analysts created an article,

    How to update dispensed data

    Data updatesUK Biobank periodically releases new data and makes updates to existing data on the UK Biobank Research Analysis Platform (UKB-RAP). Whenever the UKB-RAP updates its copy of UK Biobank ...

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  • #CheadleDA UK Biobank Data Analysts created an article,

    ML-Corrected DRAGEN whole genome sequencing (WGS) release

    Important information: The figures provided in this article may differ from those in the final data release due to participant withdrawals. We will update the figures where necessary to reflect the...

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  • #CheadleDA UK Biobank Data Analysts created an article,

    Initial DRAGEN whole genome sequencing (WGS) data release

    The initial DRAGEN WGS release contains the multiallelic multi-sample VCF (pVCF) of over 490,000 WGS samples, aggregated using DRAGEN Iterative gVCF Genotyper (IGG) on Illumina Connected Analytics ...

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  • #CheadleDA UK Biobank Data Analysts created an article,

    Working with PLINK2 fields

    DRAGEN population level WGS variant data will be available in PLINK2 format. The psam files do not have a Phenotype column. To work with the PLINK2 data using plink2 add the  --no-pheno  parameter....

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    • 7 votes