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#CheadleDA UK Biobank Data Analysts The helpers that keep the community running smoothly. UKB Community team Data Analyst

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Articles

Recent activity by #CheadleDA UK Biobank Data Analysts

  • DXA Regions of Interest (ROI)

    Overview Dual-energy X-ray absorptiometry (DXA) provides quantitative measures of body composition and bone mineral density (BMD) and is part of the imaging project within UK Biobank. ROI boundarie...

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  • Returning Derived Data to UK Biobank

    Researchers using UK Biobank data are required to return key individual-level derived results generated as part of their approved research project.  Returning these data allows them to be incorpora...

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  • How to access returned data on UKB-RAP

    This article explains how researchers can request access to returned datasets listed in the Showcase Returned Datasets Catalogue and how to make approved returns available within their UK Biobank R...

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  • Will User-Generated Files Be Automatically Filtered for Withdrawals?

    Researchers have asked whether user-generated files are automatically filtered to exclude withdrawn participants. The answer is no; these files are not automatically filtered. To ensure compliance,...

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  • JupyterLab with FSL and FreeSurfer

    This article provides some practical examples of how to access and use JupyterLab with FSL and FreeSurfer to perform brain imaging analysis, complete with details of how to visualise images. The wo...

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  • Running Docker images with the Swiss Army Knife GUI on the UKB-RAP

    IntroductionThis article explains how to use Docker images within the Swiss Army Knife (SAK) using the graphical user interface (GUI) on the UKB-RAP. The process is illustrated using the OxWearable...

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  • Cardiac Magnetic Resonance Imaging-Derived Phenotypes (CMR IDPs)

    IntroductionUK Biobank’s imaging project is collecting multi-modality imaging data on over 100,000 participants, including cardiac magnetic resonance (CMR) scans. To make this more accessible for r...

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  • How to update dispensed data

    Data Updates UK Biobank (UKB) periodically releases new data and makes updates to existing data on the UK Biobank Research Analysis Platform (UKB-RAP). Whenever the UKB-RAP updates its copy of UKB ...

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  • Why is data missing from my UKB-RAP project?

    There can be various reasons for this: The data dispensed will depend on the Access Management System (AMS) Application Tier of the project. Cost Tier 3 data, such as the Whole Genome Sequencing,...

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  • Why are there several fields for one disease?

    At assessment centres, participants answer questions about illnesses they have had before the visit. This self-report data is typically stored in fields 20002 and 20001. However, separate fields ca...

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