Former User of DNAx Community_40

Oh thanks so much for this Ondrej! I tried specifying the batches and then running: bgenix -g ukb22828_c*_b0_v3.bgen -incl-rsids GWASsnpsRSIDS.txt > c*filtered.bgenThe error I'm encountering now is...

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• 15 September 2022 04:18
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Thanks so much for these answers Ondrej. So the submission script can only be run via a CLI, and not the analysis GUI on the RAP? And thank you for explaining the instance issue to me! :)

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• 14 September 2022 07:21
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Hi Ondrej - 4.1.1 is still giving me problems. I seem to be having a space issue. Is there any workaround for this? I first tried running: qctool -g ukb22828_c#_b0_v3 -og subsetted.bgen -incl-posit...

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• 12 September 2022 04:13
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Oh excellent, thanks so much for that Ondrej! I will try running that on 4.1.1 now. I was also wondering if there is a way to run this command over multiple bgen files at once? I.e. have all 22 chr...

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• 11 September 2022 09:52
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How to fix QCtool code to filter bgen file?

 I am trying to use QCtool within SwissArmyKnife on the UKB RAP to filter bgen files down to specific SNPs. I am practicing with a single bgen. The below ran for 15 minutes, but then threw an error...

• Former User of DNAx Community_40
• 07 September 2022 00:00
• 2 followers
• 8 comments
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