Former User of DNAx Community_6

Working on processing incident events, need help.

I am trying to generate a time to events and events for specific phenotypes based on icd codes. I got results based on two versions. Both show different counts. I also would want to ask how to deal...

• 24 April 2023 00:00
• 4 followers
• 8 comments
• 0 votes

Has anyone used locus zoom in DNAnexus before?

I am trying to use locus zoom and It's been running for some time. I am not sure if it is running or not. Is there a way to check that?

• 31 March 2023 00:00
• 2 followers
• 2 comments
• 0 votes

I am running an anlysis in jupiter notebook and having issues

I am running an analysis in jupyter notebook. Everything goes well at the start and all of a sudden, The cluster is getting disappeared and I dont even see the cluster termination step too. not su...

• 28 March 2023 00:00
• 3 followers
• 5 comments
• 0 votes

Hello, I have a question regarding saige

I have generated null models using GRM using saige using a quantitative trait and want to run gwas for multiple subsets. I want to understand which is the better version. 1.) Generating sparse grm ...

• 21 March 2023 00:00
• 3 followers
• 3 comments
• 0 votes

Error Reading Public Datasets

Hello, I am trying to access the publicly available gnomAD dataset from AWS s3// file systems but I am getting timeout waiting for connection from pool error. May I know how to proceed with this er...

• 06 February 2023 00:00
• 3 followers
• 8 comments
• 0 votes

I am trying to access the files from MNT/PROJECT but not accessible

Hello, I am trying to use data in /mnt/project and upload it to hail and do the subsequent analysis. Although the results are running well when I did the initial import_plink. I am getting a file n...

• 03 February 2023 00:00
• 2 followers
• 4 comments
• 0 votes

How to upgrade a package in dna nexus?

I am trying to use hail and it's not recognizing data hosed in /mnt/project/, I tried copying the file to  /opt/notebooks/, but I am still getting the file not found error. I am not sure what is th...

• 02 February 2023 00:00
• 1 follower
• 1 comment
• 0 votes

I would like to ask you a question. Is it possible to create an applet to use the tools I installed in my environment and load the applet to use it later for other analysis? if so May I know how to do it?

• 30 January 2023 00:00
• 2 followers
• 2 comments
• 0 votes

I have seen a public resource hosted in google cloud and would like to access that information in DNAnexus. Is it possible to access datasets that are in gs:// from DNAnexus?

• 25 January 2023 00:00
• 3 followers
• 8 comments
• 0 votes

I am having issues starting a jupyter notebook. I could able to see the notebook running in the monitor section but not where we launched the notebook. Can someone help me how to resolve this?

• 18 October 2022 00:00
• 4 followers
• 6 comments
• 0 votes