Former User of DNAx Community_6
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Recent activity by Former User of DNAx Community_6
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I am trying to generate a diet score and having hard time. Can someone help me with the analysis.
May I know if any one generated a diet score before in ukbiobank? I am developing the diet score but the values are really odd so want to ask if any did it before. Thank you so much for the help.
- 3 followers
- 5 comments
- 0 votes
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Are there any annotated gds files available for ukbiobank?
- 2 followers
- 2 comments
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PlateID to sample id linker for proteomics data?
Hello, I am currently attempting to replicate the analysis conducted in the human proteome paper (Bioarxiv 2022) using a smaller sample size to validate my GWAS results, which were run on the same ...
- 3 followers
- 3 comments
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Query regarding 200k wgs dataset bgen vs Plink format files?
Hello, I have performed a GWAS analysis using the SAIGE mixed model on the 200k WGS dataset, and the results appear to deviate from what was previously observed in our analysis of the same phenotyp...
- 2 followers
- 3 comments
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Saige GWAS giving p value/se == 0 for top hits
Hello, I am running saige gwas and curating the results together and found that some of the top hits which we observed to be significant based on previous runs gave results as 0 for P & standard ...
- 2 followers
- 5 comments
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Is there a way to save locus zoom results generated through locus zoom app into the storage space?
- 2 followers
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I am trying to run saige and getting this error. Not sure what could be the reason for this. Can you help me out regarding this?
[Image: image]
- 2 followers
- 3 comments
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Has anyone faced issues installing the OlinkAnalyze package in R?
I am attempting to download the OlinkAnalyze package in order to test it, but I am encountering errors related to dependencies and the package is not installing. Has anyone else experienced this is...
- 3 followers
- 4 comments
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Can the proteomics dataset be used as is or do any additional filters need to be applied? How to check qc of the data.
- 4 followers
- 6 comments
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I am trying to download proteomics data in ukbiobank rap. I could able to extract the variable that was noted in the release email. I dont see any values in the file. I tried downloading through data portal but I am not sure if its downloading or not.
Is there a way to download these in ukbiobank rap platform. I believe we paid for complete access of all datasets but not sure why I couldn't able to download? Have anyone facing this issue ?
- 4 followers
- 12 comments
- 0 votes