Former User of DNAx Community_21
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Latest activity by Former User of DNAx Community_21
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Former User of DNAx Community_21 commented,
Hi Rachael, Thank you. You might be right. I investigated further.!ls '/mnt/project/Bulk/Imputation/Imputation from genotype (GEL)' It contains the bgen files. But failing to create the symbolic li...
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Former User of DNAx Community_21 commented,
Hi Anastazie, Thank you. I have another question. The first two columns of the output are "CHR" and "GENPOS". What does the "GENPOS" indicate, the position of the variant or gene? If it indicates t...
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Former User of DNAx Community_21 created a post,
CalledProcessError: Command '['/opt/notebooks/bgen.tgz/build/apps/bgenix', '-g', 'imputed/ukb21008_c1_b0_v1.bgen', '-incl-rsids', 'rs74045046']' returned non-zero exit status 255.
Hi, I was trying to perform phewas for my data in ukb rap. I was following: https://github.com/dnanexus/UKB_RAP/blob/main/end_to_end_gwas_phewas/get-phewas-data.ipynb I am getting the above-men...
- Former User of DNAx Community_21
- 2 followers
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Former User of DNAx Community_21 commented,
Thank you so much. For the same reason, the A1FREQ (allele frequency) is also empty?
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Former User of DNAx Community_21 created a post,
Burden test from regenie in UKB WES data; the result does not contain Alleles or BETA and SE
Hi,I was trying to burden test in WES using dx and swiss army knife using the following code:for i in {1..22}; do run_regenie_burden="regenie \ --step 2 --pred fit_snps_chr${i}_pred.list \ --bge...
- Former User of DNAx Community_21
- 3 followers
- 6 comments
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