David Curtis
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Recent activity by David Curtis
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Hi Danielle. I may have this wrong but I think what you would need to do is to submit a purchase order. If you do this then DNAnexus will raise an invoice. Then when it is paid the money is credite...
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I've emailed Access about this but just to say here that it would be helpful if people were also able to download the index file for the exome pVCFs, which I think is called field_23157_pVCF_500k_E...
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I'm not sure how you're treating the WES data but if you're using individual variants (not gene-wise burdens) and if you only have variants in exons then I certainly wouldn't expect the AUC to be a...
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Can this command also be used within a virtual machine set up by Swiss Army Knife? So that the output would end up in the project space without being downloaded?I.e. I would run Swiss Army Knife w...
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Thanks. This issue is being handled on the other thread https://community.ukbiobank.ac.uk/hc/en-gb/community/posts/17782930848029-Which-RAP-tools-work-natively-with-the-segmentation-of-the-genome-i...
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Ah, thanks, it looks like I need to “Dispense more data” to get the individual level VCFs. At the moment if I go to my project settings the “Check for updates” button is greyed out because it is "u...
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Likewise, where are the GraphTyper WGS files which this indexes? I can find some GraphTyper VCFs but they have names like ukb23352_c7_b3106_v1.vcf.gz.tbi whereas the index has names like ukb23374_c...
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Thanks. But where are the DRAGEN WGS files which this indexes? I can't find a folder which has them in? (As I've posted in another thread.)
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This seems useful but the file names don't match. I downloaded the Resource for field 24310 with wget -nd biobank.ndph.ox.ac.uk/ukb/ukb/auxdata/dragen_pvcf_coordinates.zipThe first entries look ...
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Hi. I am very interested in this issue. Is there any update on it?If not, you write “it possible to calculate the starting position by the block number x the chunk length”. Can we rely on this acro...
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