Kaitlyn Mary Price
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Latest activity by Kaitlyn Mary Price
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Kaitlyn Mary Price created a post,
WGS quality control (read depth specifically)
Hello, we have started to perform additional WGS quality control on the UKBB. We noticed there is no field for read depth or QUAL (only ‘.’) in the pvcfs. I understand a read depth (DP) < 1 was alr...
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Kaitlyn Mary Price commented,
@Diana Cornejo I am continuing this conversation from the old community board. We also removed 15-20% using DP indel filter 10 and DP snp filter 7 (90% readings for both). We are using bcftools.
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