Robin Mjelle

I think you have to run an on-demand machine to avoid this, unfortunately!

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• 11 June 2024 05:46
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plink --merge-list gives wrong chromosome annotations. GWAS tutorial.

When I run plink merge “plink --merge-list files_to_merge.txt --make-bed --autosome-xy --out ukb22418_c1_22_v2_merged” I get chromosomes 23, 24, 26 and 26, which causes an error in downstream regen...

• Robin Mjelle
• 21 May 2024 09:55
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Brilliant. This info could be nice to have in some documentation  with the DRAGEN cram files for future users. Thanks!

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• 18 March 2024 10:07
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I found out that the reference was this file, but how do I download it to my project:? /illumina/scratch/DRAGEN/data/vault/reference_genomes/Hsapiens/hg38/seq/hg38.fa

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• 15 March 2024 18:37
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Reference genome for DRAGEN WGS 500k data?

Is this the correct genomes using for working with the cram files for DRAGEN WGS 500 data:GRCh38_full_analysis_set_plus_decoy_hla.fa Thanks, 

• Robin Mjelle
• 15 March 2024 09:23
• 2 followers
• 5 comments
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Avoid data loos upon SpotInstanceInterruption

I am running a loop with samtools across multiple samples and noticed my job was restarted (SpotInstanceInterruption), meaning that all temporary output files are lost since these are uploaded to m...

• Robin Mjelle
• Edited 15 March 2024 08:15
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• 1 comment
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