Dr. Mc. Ninja
Hello
Comments
Recent activity by Dr. Mc. Ninja
-
When I was looking at missing calls vs. position, I saw a distinct trend, e.g. some regions were over-represented for missing values. However, this was actually the WES data, not the Chip data…I'd ...
- View comment
- 0 votes
-
I'm seeing lots of problems, e.g. CloudWorkstation jobs that won't die, hanging file uploads, job status won't ‘resolve’ in the GUI etc.
- View comment
- 0 votes
-
In retrospect, this can't be right… e.g. in the cohort browser you can see SNPs with VEP annotation… Lemmy pester my assistant again… Her short form: UKB WES: Consequence vs Amino-acid (HGVSp) — wh...
- View comment
- 0 votes
-
bcftools is extremely CPU-light once the variant records are in RAM – the wall-clock time you’re now seeing almost certainly reflects how fast the VCFs can be delivered to the tool rather than how ...
- View comment
- 0 votes
-
Thanks Bastien Rioux. Did this work Alexandra Baousi?
- View comment
- 0 votes
-
I see, thanks.
- View comment
- 0 votes
-
- View comment
- 0 votes
-
Glad it helped. Yeah, in theory the gitbook documentation is somewhere in github and can be improved by the community, however, I've not found the right repo to make a PR against… I forget what I w...
- View comment
- 0 votes
-
"timeout": 600000, ← This looks like what you want?
- View comment
- 0 votes
-
From the url provided:Alternatively, use the provided helper file named ukb23145_300k_OQFE.90pct10dp_qc_variants.txt, which is a single-column text file containing variants failing the “90pct10dp” ...
- View comment
- Edited
- 1 vote