Analyse on UKB-RAP

• Working with apps using dx run
• Installing tools and dependencies on UKB-RAP
• Running Docker images with the Swiss Army Knife GUI on the UKB-RAP
• Using files and apps with Command Line Interface (CLI)
• Advanced Workflow Description Language (WDL) Concepts and Docker
• Introduction to Workflow Description Language (WDL)

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• Parallelising on UKB‑RAP: How to balance speed and cost

• Imaging tools on UKB-RAP
• JupyterLab with FSL and FreeSurfer
• Using MONAI on UKB-RAP
• Viewing images on UKB RAP with 3D Slicer

• Overview of the UKB‑RAP
• Setting up a project in the UKB-RAP
• Connect your UK Biobank AMS account to the UKB-RAP
• When can I start working with data on UKB-RAP?

• How to update dispensed data
• Where can I find different types of data on UKB-RAP?
• What data can I access on the UKB-RAP?
• How to access and use dispensed data
• How do I analyse bulk data using the UKB-RAP tools library?
• Extracting phenotypic data

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• Introduction to Command Line Interface (CLI)
• Creating a workflow & customising your own tools on the UKB-RAP: Video guidance
• How to run tools: video guidance
• Getting started with the Command Line Interface (CLI) on UKB-RAP: Video guidance
• How do I use RStudio on UKB-RAP?
• Introduction to Workflow Description Language (WDL): Video guidance

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• Financial support and credit programmes
• Guide for Principal Investigators: Wallets and billing on the UKB-RAP
• How much will it cost to use the UKB-RAP?
• Will I need to pay for storage of multiple copies of the data?
• How do I view or download invoices for UKB-RAP?
• UK Biobank's VAT position and the impact on researchers