Rachael W
UKB Community team
Data Analyst
Comments
Recent activity by Rachael W
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The 500k WGS release is being processed according to the planned timeline and it is still expected to be released in Q4. We don't have a more precise estimate, but it is not likely to be before N...
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Hi Burcu, one way to get the participants without variants : save the with-variant cohort to your project storage,save the full cohort to your project storage,make sure the with-variant and the ful...
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UKB does not suggest anything. Have you seen this page from Olink:https://olink.com/faq/how-is-the-limit-of-detection-lod-estimated-and-handled/
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The phase 2 metabolomics data reached the Showcase database early in July 2023, but it is still in the pipeline for the RAP. I would expect it to be available on the RAP by mid-August, probably ...
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The tool can be used within a single-node JupyterLab. For more information on JupyterLab, see https://dnanexus.gitbook.io/uk-biobank-rap/working-on-the-research-analysis-platform/using-jupyterlab...
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The images are a bit hard to read. Here is a copy of the commands: # Create an isolated environment!mkdir test_baa3/ ; cd test_baa3/!python -m venv baa3!source baa3/bin/activate # install java!p...
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This is a known issue affecting a few fields. I am sorry this is causing you trouble. It is due to a loss of duplicated codes, such that only one occurrence of each diagnosis code is shown. Code...
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Field 3166 has up to 7 different timestamps per participant for each instance, such as instance 0 (baseline visit), because the blood was collected in 7 separate containers. For more details on th...
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As Chai mentioned, the main WES and WGS data is not accessed via the Browser, which is mainly intended for preliminary analyses on tabular data. However, the Browser does include a Genomics Searc...
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The next stage is to Dispense the data. This means that you need to get a copy of the data that is in the central RAP storage, and put it into your Project storage. The Dispense stage will take a l...
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