Daisy V
UKB Community team
Data Analyst
Comments
Recent activity by Daisy V
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Hi Junming,Category 205 is not yet available due to a delay in data being released on the UKB-RAP after updates to Showcase. Please keep an eye on our Future Timelines page for the expected release...
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Hi Nik, Sorry to hear you are having issues.Please check the job referenced in ‘notebook_locked_by’ is not running - you can do this by looking in your Monitor tab, or by dx find job --id <job_id> ...
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Hi Karine,dx extract_dataset has a limit to the number of columns it can extract, and I suspect this is what is happening here. To extract a larger number of fields to a csv, you can use the Table ...
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Hi - yes, you can get a dataset dictionary using the dx extract_dataset command. Open a JupyterLab instance (or RStudio or ttyd) and enter in the terminal:dx extract_dataset <your_dataset_id> -dddY...
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We don't recommend exporting the entire participant entity as a csv since it is so large. The csv that table exporter creates in your project will incur a storage cost - please see the rate card fo...
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Hi James, There are no limits to the amount of data that you can upload to the UKB-RAP. Please note that whilst data dispensed into your project by the UKB-RAP does not incur storage charges, you w...
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Hi Acer,Field 53 is not restricted and is available to all Tier 1 and above projects on the RAP. In the cohort browser, it is available under Assessment Centre/Recruitment/Reception. For more infor...
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Hi, this release is still in preparation - please keep an eye on our future timelines page. When released, it will appear on the RAP Data Release Versions page.
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Hi Mitja,You can manage your project files via command line from your local computer or from ttyd using the DNAnexus SDK - more information on the commands available here https://documentation.dnan...
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Hi Rufu,I've talked to Rachael about this and we think the issue is the same as that described here How to resolve REGENIE errors with GEL and TOPmed BGEN indices – UK Biobank, where GEL bgi files ...
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