George F
UKB Community team
Data Analyst
Comments
Recent activity by George F
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Hi Ashwin,This VCF and the VCFs in field 23141 are from single samples. Multi-sample VCFs are labelled as “population VCFs” in the field title on UK Biobank (ie field 23157).Note: the participant e...
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Hi Sasha, The Showcase website: https://biobank.ctsu.ox.ac.uk/showcase/search.cgi can be used to to explore the data. Alternatively exploring the field.tsv in the "Showcase metadata" of your UKB-RA...
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Dear Tokhir, You can only download summary level data from the RAP not individual level data.In this example you could download the variant name and MAF summarised for the subsampled populationbut ...
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Dear Bing Zhang, Please see this documentation for information about compiling workflows:https://documentation.dnanexus.com/developer/building-and-executing-portable-containers-for-bioinformatics-s...
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Hello Alexander, Can you provide some more information on the commands used and error messages you are having?
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HiIf you wish to run prsice2 on all the individuals/positions available in one analysis I think using the --target-list may be the correct path. However, I would suggest reaching out to the authors...
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Hi Shangyou,By selecting high priority, on-demand instances will be selected. Low priority will select spot instances. Normal priority will try select a spot instance but will switch to on-demand a...
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Hello Nicole,mutect2 should accept crams as input, see: https://gatk.broadinstitute.org/hc/en-us/articles/360037593851-Mutect2 I don't believe that samtools view can handle multiple crams at once. ...
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Hello ShiyuThe 500K DRAGEN WGS data in PLINK2 format will be released in Q1 2025.Please see the timeline for future data releases: https://www.ukbiobank.ac.uk/enable-your-research/about-our-data/fu...
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Hi AnaIf you give the inputs different names they will both print in one line (ie code below)For more information on running batch jobs please see: https://documentation.dnanexus.com/user/running-a...
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