Former User of DNAx Community_6
Posts
Recent activity by Former User of DNAx Community_6
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Saige GWAS giving p value/se == 0 for top hits
Hello, I am running saige gwas and curating the results together and found that some of the top hits which we observed to be significant based on previous runs gave results as 0 for P & standard ...
- 2 followers
- 5 comments
- 0 votes
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Is there a way to save locus zoom results generated through locus zoom app into the storage space?
- 2 followers
- 2 comments
- 0 votes
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I am trying to run saige and getting this error. Not sure what could be the reason for this. Can you help me out regarding this?
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- 2 followers
- 3 comments
- 0 votes
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Has anyone faced issues installing the OlinkAnalyze package in R?
I am attempting to download the OlinkAnalyze package in order to test it, but I am encountering errors related to dependencies and the package is not installing. Has anyone else experienced this is...
- 3 followers
- 4 comments
- 0 votes
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Can the proteomics dataset be used as is or do any additional filters need to be applied? How to check qc of the data.
- 4 followers
- 6 comments
- 0 votes
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I am trying to download proteomics data in ukbiobank rap. I could able to extract the variable that was noted in the release email. I dont see any values in the file. I tried downloading through data portal but I am not sure if its downloading or not.
Is there a way to download these in ukbiobank rap platform. I believe we paid for complete access of all datasets but not sure why I couldn't able to download? Have anyone facing this issue ?
- 4 followers
- 12 comments
- 0 votes
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Working on processing incident events, need help.
I am trying to generate a time to events and events for specific phenotypes based on icd codes. I got results based on two versions. Both show different counts. I also would want to ask how to deal...
- 4 followers
- 8 comments
- 0 votes
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Has anyone used locus zoom in DNAnexus before?
I am trying to use locus zoom and It's been running for some time. I am not sure if it is running or not. Is there a way to check that?
- 2 followers
- 2 comments
- 0 votes
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I am running an anlysis in jupiter notebook and having issues
I am running an analysis in jupyter notebook. Everything goes well at the start and all of a sudden, The cluster is getting disappeared and I dont even see the cluster termination step too. not su...
- 3 followers
- 5 comments
- 0 votes
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Hello, I have a question regarding saige
I have generated null models using GRM using saige using a quantitative trait and want to run gwas for multiple subsets. I want to understand which is the better version. 1.) Generating sparse grm ...
- 3 followers
- 3 comments
- 0 votes