• May I use the enhanced PRS (Data-Field 26200) in statistical models without calculating by myself?

  • Former User of DNAx Community_67
  • 16 February 2023 00:00
  • 0 votes
  • 3 comments

• Is the UKB going to provide the genotype array data and the imputed data in GRhC38 coordinates for general use in the platform? Given that the WES and WGS release are also in this coordinate system it would make sense. Thank you

  • Permanently deleted user
  • 16 February 2023 00:00
  • 0 votes
  • 1 comment

• WDL: what is the correct way to specify a docker/container ? ( The entity container-1234 could not be found )

  • Former User of DNAx Community_46
  • 16 February 2023 00:00
  • 0 votes
  • 10 comments

• Webinar Mar 9: End to End Target Discovery with GWAS and PheWAS

  • Brenton Pyle
  • 16 February 2023 00:00
  • 0 votes
  • 2 comments

• How to save the output from swiss army knife based analysis? I used the 'destination' part in the script but the outputs are not getting saved into the project. The codes were executed without an error and the log file shows the output files also.

  • Former User of DNAx Community_17
  • 15 February 2023 00:00
  • 0 votes
  • 3 comments

• I would like to know how is the pricing calculated? I've requested mem2_ssd1_v2_x32 and I can see that the spot/hr has a cost of 0.2112 GBP. However my job has been running for 21hr and I'm getting charged 19 GPB so far. The math does not make sense

  • Permanently deleted user
  • 14 February 2023 00:00
  • 0 votes
  • 4 comments

• WDL: how to specify a directory in the JSON input.

  • Former User of DNAx Community_46
  • 14 February 2023 00:00
  • 0 votes
  • 8 comments

• How to use tensorboard to visualise the training logs using the jupyter notebook for training a model.

  • Permanently deleted user
  • 10 February 2023 00:00
  • 0 votes
  • 6 comments

• Why are >2000 WGS pVCF chunks (200k release) apparently missing from the QC file 'qc_metrics_graphtyper_v2.7.1_qc.tab.gz'?

  • Former User of DNAx Community_53
  • 10 February 2023 00:00
  • 0 votes
  • 3 comments

• How to view contents (esp MatrixTables) in DNAX databases

  • Former User of DNAx Community_38
  • 09 February 2023 00:00
  • 0 votes
  • 1 comment

• WDL: specify directory as input.

  • Former User of DNAx Community_46
  • 09 February 2023 00:00
  • 0 votes
  • 4 comments

• Import Nextflow: Exiting with nonzero exit code to report error

  • Former User of DNAx Community_46
  • 09 February 2023 00:00
  • 0 votes
  • 2 comments

• DNA nexus and nextflow

  • Former User of DNAx Community_46
  • 08 February 2023 00:00
  • 0 votes
  • 8 comments

• dxfuse + bcftools " Input/output error" when reading.

  • Former User of DNAx Community_46
  • 08 February 2023 00:00
  • 0 votes
  • 4 comments

• WDL , docker and the "swiss army knife"

  • Former User of DNAx Community_46
  • 08 February 2023 00:00
  • 0 votes
  • 4 comments

• restart jobs that have SpotInstanceInterruption

  • Former User of DNAx Community_18
  • 07 February 2023 00:00
  • 0 votes
  • 1 comment

• Is there a codebook available for where data is located throughout the Research Analysis Platform?

  • Former User of DNAx Community_52
  • 06 February 2023 00:00
  • 0 votes
  • 6 comments

• Error Reading Public Datasets

  • Former User of DNAx Community_6
  • 06 February 2023 00:00
  • 0 votes
  • 8 comments

• I am trying to access the files from MNT/PROJECT but not accessible

  • Former User of DNAx Community_6
  • 03 February 2023 00:00
  • 0 votes
  • 4 comments

• How to upgrade a package in dna nexus?

  • Former User of DNAx Community_6
  • 02 February 2023 00:00
  • 0 votes
  • 1 comment

• Jobs trying to retrieve cached results?

  • Permanently deleted user
  • 02 February 2023 00:00
  • 0 votes
  • 2 comments

• Accessing project files from applet

  • Permanently deleted user
  • 30 January 2023 00:00
  • 0 votes
  • 1 comment

• I would like to ask you a question. Is it possible to create an applet to use the tools I installed in my environment and load the applet to use it later for other analysis? if so May I know how to do it?

  • Former User of DNAx Community_6
  • 30 January 2023 00:00
  • 0 votes
  • 2 comments

• Hello! A couple of questions:1) How do I go about getting approved for accessing the cram files (they are restricted), and 2) Are there other options for accessing raw reads (before variants are called) that are aligned to reference for position only?

  • Former User of DNAx Community_75
  • 28 January 2023 00:00
  • 0 votes
  • 4 comments

• Is there a way to extract the bulk imaging data using the spark jupyter notebook.

  • Permanently deleted user
  • 26 January 2023 00:00
  • 0 votes
  • 3 comments

• I have seen a public resource hosted in google cloud and would like to access that information in DNAnexus. Is it possible to access datasets that are in gs:// from DNAnexus?

  • Former User of DNAx Community_6
  • 25 January 2023 00:00
  • 0 votes
  • 8 comments

• Hi all! We were wondering if the SVs called by Graphtyper as LargeSVsize (Filter column) are considered as PASS. Thanks!

  • Former User of DNAx Community_87
  • 23 January 2023 00:00
  • 0 votes
  • 3 comments

• How do I call the table_exporter applet from my WDL?

  • Former User of DNAx Community_98
  • 19 January 2023 00:00
  • 0 votes
  • 2 comments

• Importing functions from one Jupyter notebook (or Python script) to another within a DNAnexus JupyterLab session

  • Former User of DNAx Community_41
  • 19 January 2023 00:00
  • 0 votes
  • 9 comments

• Is depth/coverage files available for all WES cram samples? (450K)

  • Former User of DNAx Community_44
  • 19 January 2023 00:00
  • 0 votes
  • 4 comments

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