• Announcing our First Ask Me Anything Sessions Hi folks! My name is Ben Busby and I am a Computational Biologist who loves solving complex biomedical data problems. In a couple weeks, I?m hosting our very live first Q&A here in the Community!

  • Ben Busby
  • 27 January 2022 00:00
  • 0 votes
  • 1 comment

• Should there be a pruning step in the REGENIE step1 workflow?

  • Former User of DNAx Community_28
  • 26 January 2022 00:00
  • 0 votes
  • 2 comments

• Software Carpentry Computational Skills Workshop for UK Biobank Researchers

  • Brenton Pyle
  • 25 January 2022 00:00
  • 0 votes
  • 3 comments

• For pVCF files, e.g. GraphTyper SVs is there a list of the genomic positions of the first and last variant in each batch file ?

  • Former User of DNAx Community_64
  • 25 January 2022 00:00
  • 0 votes
  • 2 comments

• Is there any way (e.g., using samtools/htsget) to access a slice of cram file (corresponding to a single genomic region) on RAP without downloading the whole cram file to a compute instance?

  • Permanently deleted user
  • 21 January 2022 00:00
  • 0 votes
  • 5 comments

• How can I create a list of all files available in a project in the RAP? Thanks!

  • Former User of DNAx Community_93
  • 19 January 2022 00:00
  • 0 votes
  • 1 comment

• Webinar Feb 17: Accelerating Time to Discovery with Whole Exome Sequencing on UK Biobank?s Research Analysis Platform with NVIDIA, RGC & UK Biobank

  • Brenton Pyle
  • 13 January 2022 00:00
  • 0 votes
  • 3 comments

• Webinar Feb 10: Advanced WDL concepts and Docker on RAP

  • Brenton Pyle
  • 10 January 2022 00:00
  • 0 votes
  • 3 comments

• Webinar Jan 27: Introduction to WDL on the Research Analysis Platform

  • Brenton Pyle
  • 10 January 2022 00:00
  • 0 votes
  • 3 comments

• What would be the cost of calculating a multilevel linear regression model with categorical exposure , continuous outcome, 15 covariates in the 500.000 particpant dataset including analytical weights and with missing values imputed by chained equations?

  • Former User of DNAx Community_41
  • 08 January 2022 00:00
  • 0 votes
  • 5 comments

• How can I estimate the resources that an AWS instance used after a run?

  • Former User of DNAx Community_48
  • 05 January 2022 00:00
  • 0 votes
  • 1 comment

• I would like to know whether the 300k Exome data is available as a single multi-sample VCF file or are they available as multiple per chromosome, per region VCF files ? (As 977 VCFs for 200k dataset)

  • Former User of DNAx Community_60
  • 19 December 2021 00:00
  • 0 votes
  • 1 comment

• What kind of data are you allowed to download? Are you allowed to download any individual-level genetic data? What about summary statistics?

  • Former User of DNAx Community_17
  • 16 December 2021 00:00
  • 0 votes
  • 1 comment

• "Are you able to suggest how long an ExWAS would take, such that I may estimate the cost?".

  • Former User of DNAx Community_1
  • 16 December 2021 00:00
  • 0 votes
  • 1 comment

• App Building cheatsheet now available

  • Ted Laderas
  • 13 December 2021 00:00
  • 0 votes
  • 2 comments

• I have dispensed an project but not all the data I am expecting is there

  • Permanently deleted user
  • 07 December 2021 00:00
  • 0 votes
  • 3 comments

• Where can I find essential UK Biobank information?

  • Oliver G
  • 02 December 2021 00:00
  • 0 votes
  • 1 comment

• zcat output empty

  • Former User of DNAx Community_85
  • 15 November 2021 00:00
  • 0 votes
  • 3 comments

• How do I specify the field titles for Table Exporter? I want to the export Docosahexanoic Acid field. I have tried specifying this field as 'p23450_i0', 'p23450_i0_a0', and even the human-readable name, but keep getting a 'Field title(s) not found' error.

  • Former User of DNAx Community_4
  • 15 November 2021 00:00
  • 0 votes
  • 4 comments

• Webinar Dec 2: How to Run Tools Already Available on the UK Biobank Research Analysis Platform

  • Brenton Pyle
  • 15 November 2021 00:00
  • 0 votes
  • 3 comments

• Webinar Dec 9: How to Create an App/Workflow & Bring your Own Tools to the UK Biobank Data on the Research Analysis Platform

  • Brenton Pyle
  • 15 November 2021 00:00
  • 0 votes
  • 12 comments

• Are there any examples of calculating the genetic risk score from different SNPs for a specific disease (e.g., diabetes) on the Research Analysis Platform (RAP)?

  • Former User of DNAx Community_14
  • 21 October 2021 00:00
  • 0 votes
  • 9 comments

• Webinar Nov 2: GWAS on the Research Analysis Platform using regenie

  • Brenton Pyle
  • 15 October 2021 00:00
  • 0 votes
  • 15 comments

• Are there any RAP grants available to the student researchers with UKB access to run some analysis besides the introductory 40 pounds?

  • Former User of DNAx Community_19
  • 07 October 2021 00:00
  • 0 votes
  • 1 comment

• Webinar Oct 12: UK Biobank Research Analysis Platform Overview

  • Brenton Pyle
  • 06 October 2021 00:00
  • 0 votes
  • 2 comments

• Webinar Oct 18: Introduction to Jupyter Notebooks on RAP

  • Brenton Pyle
  • 06 October 2021 00:00
  • 0 votes
  • 4 comments

• Webinar Oct 25: Exploring and Analyzing UK Biobank Data with Jupyter Notebooks

  • Brenton Pyle
  • 06 October 2021 00:00
  • 0 votes
  • 5 comments

• Webinar Oct 7: UK Biobank Data: About the Data & How to Apply for Access

  • Brenton Pyle
  • 30 September 2021 00:00
  • 0 votes
  • 3 comments

• Is anyone on this forum using CWL or WDL workflows? If so, I'd be happy to discuss some tips and tricks for getting them to work on the platform! Cheers! Ben

  • Former User of DNAx Community_15
  • 30 September 2021 00:00
  • 0 votes
  • 1 comment

• How do I change my profile settings?

  • Former User of DNAx Community_1
  • 03 August 2021 00:00
  • 0 votes
  • 1 comment

Featured posts

• Useful links to DNAnexus UKB-RAP resources
• Query of the Week #1: Export Phenotypic Data to a File
• Performing GWAS on RAP using DX toolkit and swiss-army-knife