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JupyterLab Server Connection Error
- Former User of DNAx Community_41
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What is the best way to separate participant IDs by ancestral genetic grouping? Similar to Data-Field 22006 (Genetic ethnic grouping) but for each ancestral group and not just Caucasians.
- Permanently deleted user
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How to locate a region of interest within a chromosome while there are multiple pVCF files for that chromosome (WES data)?
- Former User of DNAx Community_23
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How to create an applet which uses spark and a custom docker image
- Former User of DNAx Community_8
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Saving files created with Rstudio
- Former User of DNAx Community_56
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200K WGS pVCF on RAP
- Permanently deleted user
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What is the best way to run custom python script to analyze exome data?
- Former User of DNAx Community_57
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What is the best way to filter samples to keep only unrelated individuals as well as only one individual from related pairs? I am working with WES pVCF files.
- Permanently deleted user
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material for the Reproducible Research Using Docker webinar
- Chai Fungtammasan
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Hello, When looking at a specific variant in a cohort in the Genomics tab, is it possible have access to IDs of the patients having this specific variant ? Thank you !
- Former User of DNAx Community_74
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OS on the computing servers?
- Permanently deleted user
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WGS cram files truncated?
- Permanently deleted user
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I submitted a batch of 500 jobs to UKB/RAP. The number of running jobs is always 100 and the rest in waiting. Is this defined by UKB/RAP, or is it changeable?
- Permanently deleted user
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We wanted to do regression analysis on a subpopulation of 10,000 UK Biobank participants for 12 imputed SNPs on the RAP platform. It would be very helpful if you could guide us on how to proceed with the analysis on the RAP platform.
- Former User of DNAx Community_93
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Are there commands similar to squeue, scancel in SLURM for batch submitted jobs using dx run on UKB/RAP? Or any scripts available?
- Permanently deleted user
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Best alternative to lofreq in Swiss Army Knife?
- Permanently deleted user
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Webinar Sept 22: Using Docker for Reproducible Research on the Research Analysis Platform
- Brenton Pyle
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How to fix QCtool code to filter bgen file?
- Former User of DNAx Community_40
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dx error: unrecognized arguments for REGENIE
- Former User of DNAx Community_52
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Cohort Browser geno filters high impact variant with OR
- Former User of DNAx Community_30
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Issue retrieving the data field 23196 ? Whole genome GATK joint call pVCF
- Former User of DNAx Community_30
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Whole genome GraphTyper joint call pVCF README with chromosome section specification
- Former User of DNAx Community_30
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Best resources for joint call pVCF exploration?
- Former User of DNAx Community_30
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Is there a way to run an R script with a specified environment (snapshot) and instance type?
- Former User of DNAx Community_13
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Is it posible obtain a Cohort with all the Pathogenic Variants in a gene?
- Former User of DNAx Community_2
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Get EID of variant carriers from pVCF?
- Permanently deleted user
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Performing GWAS on RAP using DX toolkit and swiss-army-knife
- Former User of DNAx Community_28
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How to import a VCF file? File not found error when importing VCF file with Hail
- Former User of DNAx Community_14
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I get 'low disk space during this job' warning and my job gets aborted..im using plink via Swiss Army Knife..How can I fix this?
- Former User of DNAx Community_3
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What are your thoughts about subsetting to EA or not for WES rare variant analysis ?
- Former User of DNAx Community_95
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