Advanced tools and tutorials
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Importing functions from one Jupyter notebook (or Python script) to another within a DNAnexus JupyterLab session
- Former User of DNAx Community_41
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I'm seeing inconsistency between dx ls and dx ls *.gz and files missing from the latter are ignored by dx download *
- Former User of DNAx Community_29
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WDL "restarton" executionpolicy not being used
- Former User of DNAx Community_51
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Is there a way to change file permissions in a DNANexus project (i.e. a dx equivalent of chmod)? For example, I'd like to make it so a particular file cannot be deleted.
- Former User of DNAx Community_57
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Isn't it about time the JupyterLab instance got an overhaul?
- Former User of DNAx Community_50
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Hail JupyterLab EOF error
- Former User of DNAx Community_51
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Can someone suggest what is the best way to concatenate the .regenie files for further processing? TIA
- Former User of DNAx Community_35
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dxhelper R package for decoding Phenotype Data
- Ted Laderas
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Subset WGS pVCF
- Permanently deleted user
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Problems with rlang in RStudio on RAP?
- Former User of DNAx Community_57
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How-to run Matlab on RAP
- Ondrej Klempir
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DNA Nexus takes ages to run a job
- Former User of DNAx Community_47
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How to automatically restart jobs upon "SpotInstanceInterruption"?
- Former User of DNAx Community_51
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How to use swiss army knife with batch file?
- Former User of DNAx Community_27
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How do you run a spark app?
- Former User of DNAx Community_47
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Trouble using $in_prefix and $in_name with swiss-army-knife
- Former User of DNAx Community_41
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How to provide a Struct as an input to a WDL workflow.
- Former User of DNAx Community_18
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Samtools (sometimes) can't find reference
- Permanently deleted user
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I am trying to download data from the UKB RAP by clicking download button. However download speed is only 1000kb/s whereas at my end the VM is setup for 10Gbps. How can I increase download speed?
- Former User of DNAx Community_3
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How to obtain an updated Authorization key (.ukbkey) to download returned data?
- Former User of DNAx Community_48
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Analyzing UK Biobank WES data using SAIGE-GENE+
- Former User of DNAx Community_9
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Error when dx download files from RAP
- Former User of DNAx Community_57
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I am having issues starting a jupyter notebook. I could able to see the notebook running in the monitor section but not where we launched the notebook. Can someone help me how to resolve this?
- Former User of DNAx Community_6
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How the vcf files were formatted and how to process the vcf files.
- Former User of DNAx Community_6
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View saved plots in RStudio on RAP?
- Former User of DNAx Community_57
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Working with Hail outside of JupyterLab
- Former User of DNAx Community_41
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Efficient ways to use Swiss Army Knife
- Former User of DNAx Community_56
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ConnectionPoolTimeoutException while working in JupyterLab
- Former User of DNAx Community_41
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Tools tab not showing RStudio as an option?
- Former User of DNAx Community_57
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Using PLINK GWAS tool on the RAP generates a text output file with many duplicates. How do I get rid of the duplicates?
- Former User of DNAx Community_10
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