Advanced tools and tutorials
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Can you open a port on dxjupyterlab to allow for using the dask dashboard?
- Former User of DNAx Community_38
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SAK (bcftools) errors when streaming VCFs in batch jobs
- Permanently deleted user
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WDL: how to resume a failed workflow ? (caching)
- Former User of DNAx Community_46
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WDL: File("dx;//file-id") vs dx download
- Former User of DNAx Community_46
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Query of the Week #1: Export Phenotypic Data to a File
- Ondrej Klempir
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WDL: what is the correct way to specify a docker/container ? ( The entity container-1234 could not be found )
- Former User of DNAx Community_46
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How to save the output from swiss army knife based analysis? I used the 'destination' part in the script but the outputs are not getting saved into the project. The codes were executed without an error and the log file shows the output files also.
- Former User of DNAx Community_17
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WDL: how to specify a directory in the JSON input.
- Former User of DNAx Community_46
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How to use tensorboard to visualise the training logs using the jupyter notebook for training a model.
- Permanently deleted user
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How to view contents (esp MatrixTables) in DNAX databases
- Former User of DNAx Community_38
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WDL: specify directory as input.
- Former User of DNAx Community_46
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Import Nextflow: Exiting with nonzero exit code to report error
- Former User of DNAx Community_46
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DNA nexus and nextflow
- Former User of DNAx Community_46
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dxfuse + bcftools " Input/output error" when reading.
- Former User of DNAx Community_46
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WDL , docker and the "swiss army knife"
- Former User of DNAx Community_46
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restart jobs that have SpotInstanceInterruption
- Former User of DNAx Community_18
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Error Reading Public Datasets
- Former User of DNAx Community_6
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Accessing project files from applet
- Permanently deleted user
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I would like to ask you a question. Is it possible to create an applet to use the tools I installed in my environment and load the applet to use it later for other analysis? if so May I know how to do it?
- Former User of DNAx Community_6
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Importing functions from one Jupyter notebook (or Python script) to another within a DNAnexus JupyterLab session
- Former User of DNAx Community_41
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I'm seeing inconsistency between dx ls and dx ls *.gz and files missing from the latter are ignored by dx download *
- Former User of DNAx Community_29
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WDL "restarton" executionpolicy not being used
- Former User of DNAx Community_51
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Is there a way to change file permissions in a DNANexus project (i.e. a dx equivalent of chmod)? For example, I'd like to make it so a particular file cannot be deleted.
- Former User of DNAx Community_57
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Isn't it about time the JupyterLab instance got an overhaul?
- Former User of DNAx Community_50
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Hail JupyterLab EOF error
- Former User of DNAx Community_51
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Can someone suggest what is the best way to concatenate the .regenie files for further processing? TIA
- Former User of DNAx Community_35
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dxhelper R package for decoding Phenotype Data
- Ted Laderas
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Subset WGS pVCF
- Permanently deleted user
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Problems with rlang in RStudio on RAP?
- Former User of DNAx Community_57
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How-to run Matlab on RAP
- Ondrej Klempir
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