George F
UKB Community team
Data Analyst
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Recent activity by George F
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Dear Elby,This is not currently part of our future timelines but is something we will continue for our future prioritisation.In the meantime, please see if you are eligible for any of the credits a...
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Hi Zhengrong, I do not have enough information currently to help.Could you provide more info on what fields you used.ThanksGeorge
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Hi Andrew We do not have plans to release more versions of the DRAGEN WGS BGENs.Over to the community for advise on using HAIL.Hope this helps!George
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Hi Kent, It is possible to install samtools on your jupyterlab instance (similar to how bcftools was installed in this notebook: https://github.com/UK-Biobank/UKB-RAP-Notebooks-Genomics/blob/00dec2...
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Hi The time taken to launch JupyterLab will vary depending on the size of the instance launched and the usage at that time. There is currently no email notification alert available.If you are only ...
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Hi Gabriel, The Swiss-army-knife app contains plink2 and bcftools. You can use this to create a series of individual jobs or batch jobs, it can be launched wither interactively or from the command ...
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Hi HelenaThe allele frequency browser (https://afb.ukbiobank.ac.uk/) can be used to list SNPs for a known gene based on the WGS data. Hope this helps George
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Hi Hayley,Please see this paper for info on the DRAGEN data creation: https://www.medrxiv.org/content/10.1101/2023.12.06.23299426v1.supplementary-material Hope this helpsGeorge
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HiThe ukb23158_500k_OQFE.90pct10dp_qc_variants.txt file was created the same way as the ukb23145_300k_OQFE.90pct10dp_qc_variants.txt, which was filtered for variants that passed quality control.bcf...
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Hi Anushka,Currently batch information is not provided for this category. However, the whole exome data was released in tranches which may be useful as a batch proxy - the information can be found ...
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