Getting started with the UKB-RAP
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Costs
- Romina Gollan
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reduced access fee
- Junyi (Deb) Zhang
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Are there any RAP grants available to the student researchers with UKB access to run some analysis besides the introductory 40 pounds?
- Sooyeon Lee
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Mismatch in Non-cancer illness code, self-reported (field ID 20002) and Non-cancer illness year/age first occurred (field ID 87)
- Former User of DNAx Community_33
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File Storage Pricing
- Former User of DNAx Community_10
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Where can I find an updated Instance Rate Card?
- Former User of DNAx Community_10
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Data dispensal/refresh temporarily unavailable
- Chai Fungtammasan
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How can I estimate the recombination frequency of these 2 genes rs73182688 NLGN1 3q26.31 depression rs1501299 ADIPOQ 3q27.3 G>T BMI
- Former User of DNAx Community_10
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Are there simpler ways of doing things?
- Former User of DNAx Community_20
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We are analyzing the WES 500K files and when I remove variants for DP, allele balance, and low complexity it seems like 15-17% (both SNPs and indels) of variants on a chromosome are being removed. Does that seem like too much?
- Former User of DNAx Community_89
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How can I extract 10 random individuals from a selected cohort in UKB RAP ?
- Former User of DNAx Community_95
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My csv file is not downloading fully, what might be the possible cause.
- Former User of DNAx Community_38
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Dates corresponding to proteomic and metabolomic data.
- Former User of DNAx Community_44
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How to request an invoice for a bill?
- Former User of DNAx Community_10
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Upload permission required in applet
- Former User of DNAx Community_84
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I wrote some JAVA code (jar) which I want to run. How do I do it?
- Former User of DNAx Community_61
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Whats the best way to do simple operations with files while using bash in the RAP?
- Permanently deleted user
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How to access extracted phenotypes?
- Former User of DNAx Community_5
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Hi, my UK B data on the RAP has been on refreshing for the past two weeks. I was told that an additional variable I requested has been added but I cannot access it due to refreshing showing 0%. what do I do?
- Former User of DNAx Community_84
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How to overwrite preexisting file with the same name and path when using dx upload?
- Former User of DNAx Community_55
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How can I merge the phenotypic genetic data ( DataFrame and MatrixTable)?
- Permanently deleted user
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Using cohort browser, adding columns for 300 fields for a list of participant is going to be very tedious task. I have the field ids of those 300 fields. Is there a way to add those fields through scripts or through SQL database query?
- Former User of DNAx Community_85
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In cohort browser plots for 2 chosen cohorts are overlapping in tiles - is there any way to force them side-by-side, as it was in the video tutorials?
- Former User of DNAx Community_40
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Hello, I am using RStudio workbench. I am doing a task that takes quite long time. I get an error message and my session ends even though I am in Rstudio. Is there anyway to extend active session in RStudio? Thanks.
- Former User of DNAx Community_71
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How to use --batch-tsv with swiss army knife?
- Former User of DNAx Community_23
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Query of the week #3: Bring your custom script to analyse UKB data
- Ondrej Klempir
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Using rsID to apply genomic filter on my RAP cohort
- Former User of DNAx Community_87
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There are 5 collaborators under my project, does that mean our project has 40 x 5 = 200 pounds as the initial credit? How to set up the bill for RAP activities to be charged to the 200-pound project account, not my personal 40-pound account? Thank you!
- Former User of DNAx Community_77
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I would like to know how is the pricing calculated? I've requested mem2_ssd1_v2_x32 and I can see that the spot/hr has a cost of 0.2112 GBP. However my job has been running for 21hr and I'm getting charged 19 GPB so far. The math does not make sense
- Permanently deleted user
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How to upgrade a package in dna nexus?
- Former User of DNAx Community_6
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