UK Biobank Research Analysis Platform (UKB-RAP)

• What's changed on UKB-RAP: a guide for researchers
• When will the UKB-RAP re-open?
• Will the UKB-RAP be different?
• What must I have done before I can access the UKB-RAP?
• Do I need to delete UK Biobank data downloaded for a project that has ended?
• How will I know when my access to the UKB-RAP has been restored?

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• Detailed guidance for users of Git based code repositories
• Repository Management Best Practices for Sensitive Data
• Guidance for using code repositories when working with UK Biobank data

• UKB-RAP resources and documentation
• Parallelising on UKB‑RAP: How to balance speed and cost
• Imaging tools on UKB-RAP
• JupyterLab with FSL and FreeSurfer
• Using MONAI on UKB-RAP
• Viewing images on UKB RAP with 3D Slicer

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• Overview of the UK Biobank Research Analysis Platform (UKB‑RAP)
• Working with apps using dx run
• Installing tools and dependencies on UKB-RAP
• How to access returned data on UKB-RAP
• Running Docker images with the Swiss Army Knife GUI on the UKB-RAP
• Using files and apps with Command Line Interface (CLI)

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• Creating a workflow & customising your own tools on the UKB-RAP
• How to run tools
• Getting started with the Command Line Interface (CLI) on UKB-RAP: Video guidance
• Introduction to Workflow Description Language (WDL): Video guidance
• How to use RStudio workbench

• Financial support and credit programmes
• Wallets and billing on the UKB-RAP via DNAnexus
• How much does it cost to access UK Biobank data?
• How much will it cost me to use the UKB-RAP?
• Will I need to pay for storage of multiple copies of the data?
• How do I view or download invoices for UKB-RAP?

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