• I am hoping I can have a script to run SAIGE GWAS on Dx command line using bgen files. Best- Nihal

  • Former User of DNAx Community_91
  • 21 December 2022 00:00
  • 0 votes
  • 3 comments

• Isn't it about time the JupyterLab instance got an overhaul?

  • Former User of DNAx Community_50
  • 20 December 2022 00:00
  • 0 votes
  • 28 comments

• How to download selected genotyping data (CEL files)

  • Former User of DNAx Community_11
  • 20 December 2022 00:00
  • 0 votes
  • 1 comment

• Hail JupyterLab EOF error

  • Former User of DNAx Community_51
  • 19 December 2022 00:00
  • 0 votes
  • 1 comment

• Hi dear there Can you help me in extracting genotype data from imputed "bgen files" for certain variants using the 'bigsnpr" R package?

  • Former User of DNAx Community_88
  • 19 December 2022 00:00
  • 0 votes
  • 5 comments

• Have questions about the GEL or TOPMed Impute Data Release? Ask them here!

  • Chai Fungtammasan
  • 19 December 2022 00:00
  • 0 votes
  • 22 comments

• How can I use returned dataset on UKB-RAP

  • Chai Fungtammasan
  • 15 December 2022 00:00
  • 0 votes
  • 1 comment

• Do I have to install dx-toolkit in ttyd to interact with platform?

  • Chai Fungtammasan
  • 15 December 2022 00:00
  • 0 votes
  • 1 comment

• How do I put the subset of data from the Cohort Browser into the RStudio?

  • Chai Fungtammasan
  • 15 December 2022 00:00
  • 0 votes
  • 1 comment

• Can I package the whole workflow into a Docker?

  • Chai Fungtammasan
  • 15 December 2022 00:00
  • 0 votes
  • 1 comment

• Would downloading WES files to ttyd workstation violate of MTA?

  • Chai Fungtammasan
  • 15 December 2022 00:00
  • 0 votes
  • 1 comment

• Can I use UKB-RAP with non-UKB data?

  • Chai Fungtammasan
  • 15 December 2022 00:00
  • 0 votes
  • 1 comment

• If I am on Tier3, do I still have to pay to use RAP?

  • Chai Fungtammasan
  • 15 December 2022 00:00
  • 0 votes
  • 1 comment

• How do I extract certain variant from p.vcf.gz

  • Chai Fungtammasan
  • 15 December 2022 00:00
  • 0 votes
  • 1 comment

• Can someone suggest what is the best way to concatenate the .regenie files for further processing? TIA

  • Former User of DNAx Community_35
  • 13 December 2022 00:00
  • 0 votes
  • 4 comments

• dxhelper R package for decoding Phenotype Data

  • Ted Laderas
  • 13 December 2022 00:00
  • 0 votes
  • 1 comment

• How to read the UKB exome data from Python?

  • Former User of DNAx Community_97
  • 13 December 2022 00:00
  • 0 votes
  • 6 comments

• Subset WGS pVCF

  • Permanently deleted user
  • 13 December 2022 00:00
  • 0 votes
  • 1 comment

• Problems with rlang in RStudio on RAP?

  • Former User of DNAx Community_57
  • 09 December 2022 00:00
  • 0 votes
  • 2 comments

• Hi all?is anyone aware of an example of code to run a PheWAS on the UKB RAP?

  • Former User of DNAx Community_7
  • 07 December 2022 00:00
  • 0 votes
  • 2 comments

• How-to run Matlab on RAP

  • Ondrej Klempir
  • 06 December 2022 00:00
  • 0 votes
  • 4 comments

• Would it be possible to get some information for the Liver MRI? Some details about the different protocols of images available and some examples of tools that work for Liver mRI would be expressly helpful.

  • Brenton Pyle
  • 06 December 2022 00:00
  • 0 votes
  • 1 comment

• Image derived phenotype output is based on segmentation - instead of including them as a number, is it possible to provide as masks? i.e annotation of specific region to RAP/UKB returning data?

  • Brenton Pyle
  • 05 December 2022 00:00
  • 0 votes
  • 1 comment

• DNA Nexus takes ages to run a job

  • Former User of DNAx Community_47
  • 02 December 2022 00:00
  • 0 votes
  • 2 comments

• Where is project data when using Cloud Workstation app?

  • Former User of DNAx Community_98
  • 02 December 2022 00:00
  • 0 votes
  • 1 comment

• Utility of Hardy-Weinberg Equilibrium filtering in UKB genomic data: p<1e-15 is not a good cutoff.

  • Former User of DNAx Community_28
  • 30 November 2022 00:00
  • 0 votes
  • 2 comments

• How to automatically restart jobs upon "SpotInstanceInterruption"?

  • Former User of DNAx Community_51
  • 28 November 2022 00:00
  • 1 vote
  • 3 comments

• I want to run a PheWAS analysis using PHESANT and currently trying to generate the phenotype file. I am using table exporter to extract the phenotype data for my variables of interest.

  • Former User of DNAx Community_28
  • 28 November 2022 00:00
  • 0 votes
  • 7 comments

• How to use swiss army knife with batch file?

  • Former User of DNAx Community_27
  • 24 November 2022 00:00
  • 0 votes
  • 2 comments

• Data types

  • Permanently deleted user
  • 23 November 2022 00:00
  • 0 votes
  • 3 comments

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