Search
-
How to upgrade to most recent version of dx-toolkit?
- Former User of DNAx Community_22
-
I am analyzing the data from the 200k WGS pVCF (field 24304), and there are around 200 pVCF files per chromosome that have no variants (only the vcf file header), mostly between blocks 0 to 200. Is this intentional? Thank you!
- Former User of DNAx Community_30
-
Downloading or searching job logs -- where are they?
- Former User of DNAx Community_41
-
Hello guys: Any idea of the best way to select a cancer-free cohort to compare with cancer patients? I have tried different terms (e.g., non-cancer, cancer-free, etc.) but no good options for any of these.
- Former User of DNAx Community_77
-
How do you run a spark app?
- Former User of DNAx Community_47
-
Where can I find detailed specifications of the available instance types? I am particular interested in the GPU instances. I would like to know the GPU model, memory, etc. for each instance. Thanks!
- Permanently deleted user
-
What are the legal requirements for exporting a subset of the variant calls from the WGS or WES in DNAnexus to our internal (not local machine) work environment. Can we export a subset of variant calls to join with the clinical data?
- Former User of DNAx Community_94
-
Expected format for 500k WGS variants?
- Former User of DNAx Community_47
-
How can you request an increased job limit?
- Former User of DNAx Community_47
-
Is it possible to run a high priority app (e.g. ttyd) while many jobs are queued?
- Former User of DNAx Community_47
-
Is there a map for which regions are in each 200k WGS pVCF block?
- Permanently deleted user
-
-
Trouble using $in_prefix and $in_name with swiss-army-knife
- Former User of DNAx Community_41
-
How can I terminate all running/waiting jobs?
- Former User of DNAx Community_47
-
Are the PLINK files (.bed, .bim, .fam) available for use from the 200k whole genomes? At https://biobank.ndph.ox.ac.uk/showcase/field.cgi?tk=WfgiZClxpHlEjcBY9XYOIUP5JMWR5Tr9259499&id=24305, it notes that these data are "restricted"?
- Former User of DNAx Community_13
-
How to use R-based PLINK plug-in in RAP?
- Former User of DNAx Community_26
-
I am looking for accelerometer sleep related derived data, particularly SD of accelerometer -measured sleep duration and sleep-onset timing across 7 nights. I was wondering if there are any return datasets that contain these variables.
- Former User of DNAx Community_32
-
How to provide a Struct as an input to a WDL workflow.
- Former User of DNAx Community_18
-
SnpEff not labelling all LOF variants? Certain stop gained/lost or frameshift variants are not labelled as being LOF?
- Permanently deleted user
-
We are downloading the raw accelerometry data (p90001) from physical activity measurements. However, the raw data in the ?activity? folder only showed 50000 items, and the other half items can not been seen or downloaded. How we can solve this?
- Former User of DNAx Community_90
-
200K WGS data
- Permanently deleted user
-
Is it possible to ensure VCF indices (and other secondary files) are localized to the same directory in WDL?
- Former User of DNAx Community_18
-
Samtools (sometimes) can't find reference
- Permanently deleted user
-
Getting "Reconnect Your Account to UK Biobank" every time I try to log in to the RAP
- Permanently deleted user
-
I am trying to download data from the UKB RAP by clicking download button. However download speed is only 1000kb/s whereas at my end the VM is setup for 10Gbps. How can I increase download speed?
- Former User of DNAx Community_3
-
gzip can't be run in aws:eu-west2?
- Former User of DNAx Community_41
-
How to obtain an updated Authorization key (.ukbkey) to download returned data?
- Former User of DNAx Community_48
-
Analyzing UK Biobank WES data using SAIGE-GENE+
- Former User of DNAx Community_9
-
How to access returned data sets using the cohort browser
- Former User of DNAx Community_48
-
Featured posts
Didn't find what you were looking for?
New post