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Where can I find an updated Instance Rate Card?
- Former User of DNAx Community_10
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Where is INFO score information of the GEL imputed data? Why is variant filtering by INFO missing from the "End-to-end GWAS PheWAS" on ischemic heart disease documentation?
- Former User of DNAx Community_22
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Burden test from regenie in UKB WES data; the result does not contain Alleles or BETA and SE
- Former User of DNAx Community_21
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Has a pQTL analysis been conducted, and are the results, encompassing all variants (imputed, WES, or WGS), available for 1,500 proteins? Can REGENIE be used with WES/WGS data, and what specific considerations should be taken into account? Thanks
- Former User of DNAx Community_26
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I am creating a new workflow from scratch with my own custom apps. How can I have 1 central version of this workflow without needed to copy it to directories where the data is located? I want this workflow to be private to my project.
- Former User of DNAx Community_27
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Anyone know of a good workflow/tools to look at trisonomy in the 500K cohort? I don't have much experience with CNVs so beginner level explanations would be much appreciated, thanks!
- Former User of DNAx Community_16
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Saige null model generation giving error when trying to do on the complete dataset
- Former User of DNAx Community_6
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Polite inquiry about how to efficiently analyze the huge raw data of accelerometry on RAP?
- Former User of DNAx Community_75
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Efficiently extract singletons from WGS data on UKB-RAP
- Former User of DNAx Community_24
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Results of fewer SNPs total after using PJ Greer's scripts for Regenie using Plink genotype calls and final WES.
- Former User of DNAx Community_33
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how can I define a cohort without using the cohort browser?
- Former User of DNAx Community_94
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When I create a notebook in JupyterLab from the DNAnexus tab (project storage), I can't open it. Message says its a protected project. Any suggestions? Do I have too always use dx download then?
- Former User of DNAx Community_97
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Is there a map for which regions are in each 500k Whole EXOME Sequencing final release pVCF (23157) block and for the alternative gnoMAD pVCF (24068)?
- Former User of DNAx Community_94
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How to skip downloading files that already exist with dx download?
- Former User of DNAx Community_55
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Data dispensal/refresh temporarily unavailable
- Chai Fungtammasan
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Availability of pre-computed relatedness information?
- Permanently deleted user
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Assistance with LMM-BOLT through the Swiss Army Knife platform: Assertion `CompressedSNPBlocks==1' failed.
- Former User of DNAx Community_25
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How can we set a retry policy on dx run jobs?
- Former User of DNAx Community_55
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Refresh of data is been in pending since last thursday
- Former User of DNAx Community_6
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How can I estimate the recombination frequency of these 2 genes rs73182688 NLGN1 3q26.31 depression rs1501299 ADIPOQ 3q27.3 G>T BMI
- Former User of DNAx Community_10
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Selection of the GFF file version
- Former User of DNAx Community_35
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Hi, for a potential grant proposal, I want to understand how many Parkinson's patients exist in the database with the ICD-10 code Z45.1 Adjustment and management of infusion pump. Any help with this would be greatly appreciated! Thanks!
- Former User of DNAx Community_82
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Are there simpler ways of doing things?
- Former User of DNAx Community_20
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How to create an applet with the "feature" IMAGE_PROCESSING (i.e., FSL, Nipype, FreeSurfer) automatically loaded? Is this possible? I know how to load a JupyterLab instance, but was wondering if one could make an applet that automatically has these
- Former User of DNAx Community_9
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Does anyone know how to get sample ID and batch in which proteins were quantified information?
- Former User of DNAx Community_6
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Range request to only download a BAM genomic interval
- Former User of DNAx Community_46
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Running frequency counts on UKBB WGS 200K dataset leads to missing variants
- Former User of DNAx Community_80
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Hi everyone. I requested Return Data Field from UKBB, and they provided a TXT File.. They wrote that "Linkage has been undertaken such that IDs within the files correspond to IDs for your application". How do I combine that to my project? Thank you.
- Former User of DNAx Community_90
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How can I exclude with participants have specific diagnoses from my cohort using cohort browser?
- Permanently deleted user
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A mismatch in cause of death - ICD - 10 data
- Permanently deleted user
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