• How can I terminate all running/waiting jobs?

  • Former User of DNAx Community_47
  • 09 November 2022 00:00
  • 0 votes
  • 1 comment

• Are the PLINK files (.bed, .bim, .fam) available for use from the 200k whole genomes? At https://biobank.ndph.ox.ac.uk/showcase/field.cgi?tk=WfgiZClxpHlEjcBY9XYOIUP5JMWR5Tr9259499&id=24305, it notes that these data are "restricted"?

  • Former User of DNAx Community_13
  • 08 November 2022 00:00
  • 0 votes
  • 1 comment

• How to use R-based PLINK plug-in in RAP?

  • Former User of DNAx Community_26
  • 07 November 2022 00:00
  • 0 votes
  • 5 comments

• I am looking for accelerometer sleep related derived data, particularly SD of accelerometer -measured sleep duration and sleep-onset timing across 7 nights. I was wondering if there are any return datasets that contain these variables.

  • Former User of DNAx Community_32
  • 06 November 2022 00:00
  • 0 votes
  • 6 comments

• How to provide a Struct as an input to a WDL workflow.

  • Former User of DNAx Community_18
  • 04 November 2022 00:00
  • 0 votes
  • 3 comments

• SnpEff not labelling all LOF variants? Certain stop gained/lost or frameshift variants are not labelled as being LOF?

  • Permanently deleted user
  • 03 November 2022 00:00
  • 0 votes
  • 5 comments

• We are downloading the raw accelerometry data (p90001) from physical activity measurements. However, the raw data in the ?activity? folder only showed 50000 items, and the other half items can not been seen or downloaded. How we can solve this?

  • Former User of DNAx Community_90
  • 03 November 2022 00:00
  • 0 votes
  • 2 comments

• 200K WGS data

  • Permanently deleted user
  • 03 November 2022 00:00
  • 0 votes
  • 1 comment

• Is it possible to ensure VCF indices (and other secondary files) are localized to the same directory in WDL?

  • Former User of DNAx Community_18
  • 02 November 2022 00:00
  • 0 votes
  • 2 comments

• Samtools (sometimes) can't find reference

  • Permanently deleted user
  • 31 October 2022 00:00
  • 0 votes
  • 7 comments

• Getting "Reconnect Your Account to UK Biobank" every time I try to log in to the RAP

  • Permanently deleted user
  • 31 October 2022 00:00
  • 0 votes
  • 7 comments

• I am trying to download data from the UKB RAP by clicking download button. However download speed is only 1000kb/s whereas at my end the VM is setup for 10Gbps. How can I increase download speed?

  • Former User of DNAx Community_3
  • 28 October 2022 00:00
  • 0 votes
  • 1 comment

• gzip can't be run in aws:eu-west2?

  • Former User of DNAx Community_41
  • 28 October 2022 00:00
  • 0 votes
  • 1 comment

• How to obtain an updated Authorization key (.ukbkey) to download returned data?

  • Former User of DNAx Community_48
  • 22 October 2022 00:00
  • 0 votes
  • 1 comment

• Analyzing UK Biobank WES data using SAIGE-GENE+

  • Former User of DNAx Community_9
  • 21 October 2022 00:00
  • 0 votes
  • 16 comments

• How to access returned data sets using the cohort browser

  • Former User of DNAx Community_48
  • 21 October 2022 00:00
  • 0 votes
  • 1 comment

• Webinar Dec 1: Advanced Image Management and Analysis in the Cloud

  • Brenton Pyle
  • 21 October 2022 00:00
  • 0 votes
  • 3 comments

• I want to use WES data to perform analysis, but I can't find information on the exome sequencing batch. Second, are there principal components for WES data analysis?

  • Former User of DNAx Community_99
  • 20 October 2022 00:00
  • 0 votes
  • 4 comments

• Error when dx download files from RAP

  • Former User of DNAx Community_57
  • 20 October 2022 00:00
  • 0 votes
  • 1 comment

• What should the genotype prefix of bgen be for regenie burden test step 2?

  • Former User of DNAx Community_52
  • 19 October 2022 00:00
  • 0 votes
  • 1 comment

• Best approach annotating variants with CADD and gnomAD

  • Former User of DNAx Community_29
  • 19 October 2022 00:00
  • 0 votes
  • 3 comments

• Table exporter with all fields?

  • Former User of DNAx Community_29
  • 18 October 2022 00:00
  • 0 votes
  • 7 comments

• I am having issues starting a jupyter notebook. I could able to see the notebook running in the monitor section but not where we launched the notebook. Can someone help me how to resolve this?

  • Former User of DNAx Community_6
  • 18 October 2022 00:00
  • 0 votes
  • 6 comments

• How the vcf files were formatted and how to process the vcf files.

  • Former User of DNAx Community_6
  • 17 October 2022 00:00
  • 0 votes
  • 1 comment

• View saved plots in RStudio on RAP?

  • Former User of DNAx Community_57
  • 14 October 2022 00:00
  • 0 votes
  • 3 comments

• I am looking for NMR metabolites in UKB RAP phenotypes. I have a few questions: 1.) May I know how many NMR metabolites are in UKB RAP? 2.) Can you help how to find all metabolites? 3.) What QC steps generally were followed?

  • Former User of DNAx Community_6
  • 14 October 2022 00:00
  • 0 votes
  • 5 comments

• dxcompile compile errors

  • Former User of DNAx Community_51
  • 14 October 2022 00:00
  • 0 votes
  • 1 comment

• Hello, I am trying to generate phenotypes with Time to Events for the survival analysis I want to conduct. Did anyone generate these before if so Please do let me know how to do it. Thank you so much for the help..

  • Former User of DNAx Community_6
  • 14 October 2022 00:00
  • 1 vote
  • 3 comments

• SNP IDs in WGS

  • Former User of DNAx Community_56
  • 12 October 2022 00:00
  • 0 votes
  • 4 comments

• I am trying to find WGS vcf files. I see individual-level vcf files per sample. Where can I find joined called vcf files for WGS located? Please do let me know how to access those and use them for the extraction of the gene region I am interested in.?

  • Former User of DNAx Community_6
  • 12 October 2022 00:00
  • 0 votes
  • 8 comments

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