Advanced tools and tutorials
-
What are the tools that can be used in the UKB RAP for variant annotation?
- Permanently deleted user
-
Can one run a PBS job script using qsub in UKB RAP? Can it be done in ttyd?
- Former User of DNAx Community_34
-
How to do code separation when building python applet
- Former User of DNAx Community_92
-
can I use BOLT LMM for my job and how to use it
- Former User of DNAx Community_31
-
Latest data refresh deleted previous cohort datasets and breaks custom dashboards
- Former User of DNAx Community_55
-
I'm trying to use "dx upload filename --destination "project/path" from my university network but I'm getting errors like: urllib3.exceptions.ProtocolError: ('Connection aborted.', TimeoutError('The write operation timed out')) Is there an outage?
- Former User of DNAx Community_55
-
Using VEP with docker, mount a cache located in my UKB project
- Former User of DNAx Community_68
-
Hi there, I'm trying to build a python applet and would like to use multiprocessing module to go faster with the 96 core instance option. Is there a code snippet I can steal for this? I tried the basic one with multiprocessing.pool, but got no luck.
- Former User of DNAx Community_92
-
How to run the R script faster on UKB RAP?
- Former User of DNAx Community_34
-
Query of the week #8: Filtering BGEN file and exporting geno data to Pandas df
- Ondrej Klempir
-
Swiss Army Knife not generating outputs (merged .bed file)?
- Former User of DNAx Community_42
-
WDL instance type definition
- Permanently deleted user
-
How to use more than 100 machines simultaneously
- Former User of DNAx Community_55
-
Anyone else seeing Py4JJavaError today when using toPandas()?
- Former User of DNAx Community_12
-
Query of the week #7: About linking geno and pheno data
- Ondrej Klempir
-
When connecting to a job via SSH, is there any way to manually send a "Done" signal instead of terminating it with dx terminate ?
- Former User of DNAx Community_48
-
Has anyone used locus zoom in DNAnexus before?
- Former User of DNAx Community_6
-
I am running an anlysis in jupiter notebook and having issues
- Former User of DNAx Community_6
-
file paths in WDL json files.
- Former User of DNAx Community_62
-
Using returned accelerometer data on UKB RAP
- Former User of DNAx Community_86
-
Specify a normal filename / filepath for input JSON using WDL
- Former User of DNAx Community_55
-
Extraneous jobs for input and output when running WDL workflows?
- Former User of DNAx Community_55
-
Hello, I have a question regarding saige
- Former User of DNAx Community_6
-
dxfuse: automatically mount /mnt/project on custom Docker images?
- Former User of DNAx Community_55
-
How does dxfuse work in MacOS?
- Permanently deleted user
-
How can I verify that a WDL workflow previously compiled with dxCompiler was compiled with the -streamFiles flag?
- Former User of DNAx Community_98
-
Query of the week #4: Working with JSON and jq to get more details about your cohort(s)
- Ondrej Klempir
-
Is it possible to restart a single failed block within a scattered WDL task ?
- Former User of DNAx Community_48
-
BOLT-LMM v2.4.1 update (added support for new bgen files)
- Permanently deleted user
-
Query of the week #2: Manipulating Optical Coherence Tomography data in PySpark
- Ondrej Klempir
Didn't find what you were looking for?
New post