Rachael W
UKB Community team
Data Analyst
Comments
Recent activity by Rachael W
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Hi Jacob,the SNP-filtering github notebook does not work for the Whole Exome or Whole Genome Sequencing data.To work with the Whole Exome Sequence data, it is possible to use the UKB-RAP Cohort Bro...
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Hi Andrea,When RStudio was first introduced on the UKB-RAP it was on a trial basis. That trial was considered successful, and RStudio is now a standard feature. I apologise for the confusion. I...
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Hi Dr. Mc. Ninja,there is no UKB test project. The UKB-RAP is the only UK Biobank item on the DNAnexus platform. The “Bulk folder” must be specific to the UKB implementation.A few researchers hav...
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Hi Akhil,I agree that those codes for the prealbumin test are not present in the UKB GP Clinical data . This is probably because they are not common in UK practice, see the last paragraph of sect...
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Hi Shengan, that is a good question!According to Wikipedia , “the NCIN is a UK organisation that attempts to work closely with cancer services in England, Scotland, Wales and Northern Ireland but ...
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Hi Sara,No, there is no easy way to find that. For specific SNPs that are covered by the Genotyping data, there is a Notebook https://github.com/UK-Biobank/SNP-filtering and a forum post https:/...
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Hi Elby,For future reference, I came across this page recently https://dnanexus.gitbook.io/uk-biobank-rap/master/frequently-asked-questions/general-faqs#how-can-i-find-out-what-data-release-version...
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Hi Jay,No, I definitely didn’t mean March 2025. If there were any updates to UKB Showcase in March 2025, then the data for those updates would definitely not yet be available on the UKB-RAP.There...
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Hi Ian,I don't know the answer to that, as I have only ever tried it with rs ids.I suggest you start a new forum thread (click the New Post button) with “SNP filtering for genomic regions” in the t...
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Hi Jay, the UKB Showcase was updated before the UKB-RAP.Normally, because of the way UKB processes work, the UKB Showcase will be updated a few weeks before the UKB-RAP version. For the latest ve...
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