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How to run the R script faster on UKB RAP?
- Former User of DNAx Community_34
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Swiss Army Knife not generating outputs (merged .bed file)?
- Former User of DNAx Community_42
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WDL instance type definition
- Permanently deleted user
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How to use more than 100 machines simultaneously
- Former User of DNAx Community_55
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Anyone else seeing Py4JJavaError today when using toPandas()?
- Former User of DNAx Community_12
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How to get skato to work with Regenie?
- Former User of DNAx Community_21
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How to use parabricks mutect2 caller on multiple .cram files?
- Former User of DNAx Community_25
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Query of the week #7: About linking geno and pheno data
- Ondrej Klempir
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When connecting to a job via SSH, is there any way to manually send a "Done" signal instead of terminating it with dx terminate ?
- Former User of DNAx Community_48
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Has anyone used locus zoom in DNAnexus before?
- Former User of DNAx Community_6
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Is there a way to specify alleles e.g. (C;C) or (T;C) after an RSID in the cohort browser?
- Former User of DNAx Community_58
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end_to_end_gwas_phewas/gwas-phenotype-samples-qc.ipynb
- Permanently deleted user
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I am running an anlysis in jupiter notebook and having issues
- Former User of DNAx Community_6
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Hesin ICD10 digit availability
- Permanently deleted user
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Are the X-chromosome heterozygosity scores available?
- Former User of DNAx Community_21
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Is there a way to determine which instance should be used for a particular application?
- Permanently deleted user
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file paths in WDL json files.
- Former User of DNAx Community_62
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How to overwrite preexisting file with the same name and path when using dx upload?
- Former User of DNAx Community_55
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Virtual Meetup April 20th: Large-Scale Genomics Research with the UK Biobank Platform Credits Programme
- Brenton Pyle
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I want to perform a GWAS using phenotype and genotype data on unrelated individuals (regression). How to add phenotype, genotype, and covariates data for unrelated individuals either in Jupyter lab or Rstudio on RAP to perform my analysis.
- Former User of DNAx Community_34
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How can I merge the phenotypic genetic data ( DataFrame and MatrixTable)?
- Permanently deleted user
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dxfuse mounted filesystem eventually fails with "transport endpoint is not connected"
- Former User of DNAx Community_55
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Using returned accelerometer data on UKB RAP
- Former User of DNAx Community_86
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Cohort Selection and Genomic & Phenotype Data Extraction - Machine Learning 1: Coffee Break".
- Permanently deleted user
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Specify a normal filename / filepath for input JSON using WDL
- Former User of DNAx Community_55
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Using cohort browser, adding columns for 300 fields for a list of participant is going to be very tedious task. I have the field ids of those 300 fields. Is there a way to add those fields through scripts or through SQL database query?
- Former User of DNAx Community_85
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Extraneous jobs for input and output when running WDL workflows?
- Former User of DNAx Community_55
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